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| Locus name | AT4G37390 |
| Alias | AUR3/YDK1/BRU6 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Hormone response pathway:Auxin |
| Effect for Senescence | unclear |
| Gene Description | Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. |
| Evidence | Molecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2] |
| References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-422: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Pathway | |
| Sequence | AT4G37390.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT4G37390.1
miRNA: ath-miR170
miRNA: ath-miR170
mfe: -24.6 kcal/mol
p-value: 0.049332
position: 223
target 5' A C A U 3'
AUAU UGA ACGGUUCGAUC
UAUA ACU UGCCGAGUUAG
miRNA 3' C G U 5'
target: AT4G37390.1
miRNA: ath-miR776
miRNA: ath-miR776
mfe: -23.6 kcal/mol
p-value: 0.029014
position: 424
target 5' C A C 3'
AAC AUUGA AGAAGACUUAGA
UUG UAGUU UCUUCUGAAUCU
miRNA 3' A 5'
target: AT4G37390.1
miRNA: ath-miR830
miRNA: ath-miR830
mfe: -24.1 kcal/mol
p-value: 0.008534
position: 1597
target 5' U A U U G 3'
GGCU AG GCUGUUUGGAGA GGA
UUGG UU UGAUAAACCUCU UCU
miRNA 3' A 5'
target: AT4G37390.1
miRNA: ath-miR856
miRNA: ath-miR856
mfe: -24.8 kcal/mol
p-value: 0.002794
position: 911
target 5' G U U U 3'
GCUG AGUU UUGGU GGGGUU
CGAC UCAA AACCA UCCUAA
miRNA 3' U U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_131781 | |
| Cross Link | |
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