Basic information
Locus name	AT4G25500
Alias	ATRSP35
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATRSP35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G52040.2); Has 12921 Blast hits to 9668 proteins in 431 species: Archae - 10; Bacteria - 508; Metazoa - 8546; Fungi - 1314; Plants - 1339; Viruses - 44; Other Eukaryotes - 1160 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT4G25500.1 | Genomic | mRNA | CDS | Protein AT4G25500.2 | Genomic | mRNA | CDS | Protein AT4G25500.3 | Genomic | mRNA | CDS | Protein AT4G25500.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_142601	Accession Taxon NP_001078447 Arabidopsis thaliana NP_001154773 Arabidopsis thaliana NP_001154774 Arabidopsis thaliana NP_194280 ( AT4G25500 ) Arabidopsis thaliana NP_200017 Arabidopsis thaliana NP_851174 Arabidopsis thaliana NP_974616 Arabidopsis thaliana CMO009C Cyanidioschyzon merolae strain 10D NP_001045729 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_1440043 Physcomitrella patens subsp. patens 30147.m014308 Ricinus communis e_gw1.7.312.1 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10548 2.1E-151 1 307 No hit NA SUPERFAMILY SSF54928 4.0E-6 1 51 No hit NA SUPERFAMILY SSF54928 8.0E-22 41 134 No hit NA ProSiteProfiles PS50102 15.8 56 127 IPR000504 RNA recognition motif domain SMART SM00360 2.6E-17 57 123 IPR000504 RNA recognition motif domain Pfam PF00076 3.8E-13 58 120 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence SUBAcon Pubmed ID 23180787