Basic information
Locus name	AT4G27000
Alias	ATRBP45C
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATRBP45C; FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 24066 Blast hits to 14859 proteins in 588 species: Archae - 10; Bacteria - 1237; Metazoa - 14401; Fungi - 2729; Plants - 3582; Viruses - 5; Other Eukaryotes - 2102 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT4G27000.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128280	Accession Taxon NP_001078604 Arabidopsis thaliana NP_172630 Arabidopsis thaliana NP_175383 Arabidopsis thaliana NP_188544 Arabidopsis thaliana NP_197436 Arabidopsis thaliana NP_567764 ( AT4G27000 ) Arabidopsis thaliana NP_568815 Arabidopsis thaliana NP_849641 Arabidopsis thaliana 193148 Chlamydomonas reinhardtii ACO61932 Micromonas sp. RCC299 NP_001049124 Oryza sativa Japonica Group NP_001050516 Oryza sativa Japonica Group NP_001053941 Oryza sativa Japonica Group NP_001061165 Oryza sativa Japonica Group 0300010387 Ostreococcus tauri estExt_Genewise1.C_3910068 Physcomitrella patens subsp. patens gw1.219.6.1 Physcomitrella patens subsp. patens gw1.339.2.1 Physcomitrella patens subsp. patens 29666.m001436 Ricinus communis 29801.m003218 Ricinus communis 29842.m003612 Ricinus communis 30169.m006434 Ricinus communis XP_002952162 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF54928 1.8E-17 46 159 No hit NA PANTHER PTHR24012 6.2E-175 51 412 No hit NA ProSiteProfiles PS50102 14.1 80 160 IPR000504 RNA recognition motif domain SMART SM00360 2.0E-7 81 156 IPR000504 RNA recognition motif domain Pfam PF00076 4.1E-9 82 147 IPR000504 RNA recognition motif domain SUPERFAMILY SSF54928 8.1E-43 171 353 No hit NA ProSiteProfiles PS50102 16.6 173 252 IPR000504 RNA recognition motif domain SMART SM00360 9.6E-21 174 248 IPR000504 RNA recognition motif domain Pfam PF00076 1.5E-17 175 245 IPR000504 RNA recognition motif domain ProSiteProfiles PS50102 16.5 278 350 IPR000504 RNA recognition motif domain SMART SM00360 8.5E-20 279 346 IPR000504 RNA recognition motif domain Pfam PF00076 1.6E-15 280 344 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787