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About
Basic information   
Locus name AT4G35790
AliasATPLDDELTA
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionATPLDDELTA; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, phosphatidic acid metabolic process, hyperosmotic salinity response, response to cold, programmed cell death; LOCATED IN: microtubule cytoskeleton, plasma membrane, vacuole, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (TAIR:AT2G42010.1); Has 1637 Blast hits to 1320 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 418; Fungi - 298; Plants - 462; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
biological process
cellular component
molecular function
Pathway
KEGG
MetaCyc
SequenceAT4G35790.1 | Genomic | mRNA | CDS | Protein
AT4G35790.2 | Genomic | mRNA | CDS | Protein
AT4G35790.3 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT4G35790.1 
miRNA: ath-miR5021
miRNA: ath-miR5021
mfe: -30.5 kcal/mol 
p-value: 0.000132 

position: 247 
target 5' C                   C  3' 
           UUUUCUUCUUCUUCUUCUU     
           AAAAGAAGAAGAAGAAGAG     
miRNA  3'                     U  5' 
target: AT4G35790.2 
miRNA: ath-miR5021
miRNA: ath-miR5021
mfe: -30.5 kcal/mol 
p-value: 0.000130 

position: 247 
target 5' C                   C  3' 
           UUUUCUUCUUCUUCUUCUU     
           AAAAGAAGAAGAAGAAGAG     
miRNA  3'                     U  5' 
target: AT4G35790.3 
miRNA: ath-miR5021
miRNA: ath-miR5021
mfe: -30.5 kcal/mol 
p-value: 0.000140 

position: 247 
target 5' C                   C  3' 
           UUUUCUUCUUCUUCUUCUU     
           AAAAGAAGAAGAAGAAGAG     
miRNA  3'                     U  5' 
Ortholog Group      
Ortholog Groups: OG5_131416
AccessionTaxon
NP_175666Arabidopsis thaliana
NP_175914Arabidopsis thaliana
NP_188194Arabidopsis thaliana
NP_192920Arabidopsis thaliana
NP_192921Arabidopsis thaliana
NP_192922Arabidopsis thaliana
NP_197919Arabidopsis thaliana
NP_565963Arabidopsis thaliana
NP_567160Arabidopsis thaliana
NP_567989 ( AT4G35790 ) Arabidopsis thaliana
NP_849501Arabidopsis thaliana
NP_849502Arabidopsis thaliana
NP_849539Arabidopsis thaliana
NP_001042153Oryza sativa Japonica Group
NP_001048777Oryza sativa Japonica Group
NP_001051849Oryza sativa Japonica Group
NP_001054773Oryza sativa Japonica Group
NP_001058015Oryza sativa Japonica Group
NP_001058016Oryza sativa Japonica Group
NP_001058017Oryza sativa Japonica Group
NP_001059324Oryza sativa Japonica Group
NP_001063203Oryza sativa Japonica Group
NP_001063826Oryza sativa Japonica Group
NP_001065108Oryza sativa Japonica Group
e_gw1.19.181.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_80143Physcomitrella patens subsp. patens
estExt_Genewise1.C_940006Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_580068Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_100017Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_360039Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_20288Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3240023Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_165000063Physcomitrella patens subsp. patens
28320.m001141Ricinus communis
28694.m000682Ricinus communis
28725.m000311Ricinus communis
29784.m000369Ricinus communis
29841.m002847Ricinus communis
29848.m004631Ricinus communis
30170.m014290Ricinus communis
30174.m008942Ricinus communis
30190.m011102Ricinus communis
thaps1_ua_kg.chr_3000222Thalassiosira pseudonana CCMP1335
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR188960.01850IPR015679Phospholipase D family
PIRSFPIRSF0364700.01857IPR011402Phospholipase D, plant
SUPERFAMILYSSF495629.2E-241144IPR008973C2 calcium/lipid-binding domain, CaLB
SMARTSM002395.7E-1815153IPR000008C2 calcium-dependent membrane targeting
PfamPF001682.1E-2516138IPR000008C2 calcium-dependent membrane targeting
ProSiteProfilesPS5000411.930138IPR018029C2 membrane targeting protein
SUPERFAMILYSSF495629.2E-2476178IPR008973C2 calcium/lipid-binding domain, CaLB
SUPERFAMILYSSF560242.5E-29200399No hitNA
PfamPF006146.4E-6357392IPR001736Phospholipase D/Transphosphatidylase
ProSiteProfilesPS5003510.0357392IPR001736Phospholipase D/Transphosphatidylase
SMARTSM001551.2357392IPR001736Phospholipase D/Transphosphatidylase
SUPERFAMILYSSF560242.5E-29425463No hitNA
SUPERFAMILYSSF560244.7E-27553657No hitNA
SUPERFAMILYSSF560244.7E-27698786No hitNA
ProSiteProfilesPS5003514.2702729IPR001736Phospholipase D/Transphosphatidylase
SMARTSM001551.0E-6702729IPR001736Phospholipase D/Transphosphatidylase
PfamPF006141.6E-6703729IPR001736Phospholipase D/Transphosphatidylase
PfamPF123573.5E-28777848IPR024632Phospholipase D, C-terminal
Subcellular Localization   
Localization 1
Localizationcytosol
EvidenceSUBAcon
Pubmed ID23180787
Localization 2
Localizationplasma membrane
EvidenceSUBAcon
Pubmed ID23180787