Basic information
Locus name	AT3G46230
Alias	ATHSP17.4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATHSP17.4; INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (TAIR:AT1G53540.1); Has 4388 Blast hits to 4388 proteins in 962 species: Archae - 105; Bacteria - 2471; Metazoa - 62; Fungi - 214; Plants - 997; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G46230.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G46230.1  miRNA: ath-miR5015 miRNA: ath-miR5015 mfe: -29.4 kcal/mol  p-value: 0.000553  position: 395  target 5' A     G G             U  3'             GAAGA U ACACAUGGCACCG                 CUUCU A UGUGUAUUGUGGU      miRNA  3'       G               U  5'
Ortholog Group
Ortholog Groups: OG5_126935	Accession Taxon NP_172220 Arabidopsis thaliana NP_175759 Arabidopsis thaliana NP_176195 Arabidopsis thaliana NP_180511 Arabidopsis thaliana NP_190209 ( AT3G46230 ) Arabidopsis thaliana NP_194497 Arabidopsis thaliana NP_200780 Arabidopsis thaliana CMJ100C Cyanidioschyzon merolae strain 10D CMJ101C Cyanidioschyzon merolae strain 10D 134508 Chlamydomonas reinhardtii 142751 Chlamydomonas reinhardtii ACO67645 Micromonas sp. RCC299 ACO70106 Micromonas sp. RCC299 NP_001041951 Oryza sativa Japonica Group NP_001041953 Oryza sativa Japonica Group NP_001041954 Oryza sativa Japonica Group NP_001041955 Oryza sativa Japonica Group NP_001049541 Oryza sativa Japonica Group NP_001049657 Oryza sativa Japonica Group NP_001049660 Oryza sativa Japonica Group NP_001049661 Oryza sativa Japonica Group NP_001049662 Oryza sativa Japonica Group 0900010077 Ostreococcus tauri 1700010087 Ostreococcus tauri 1800010210 Ostreococcus tauri e_gw1.105.75.1 Physcomitrella patens subsp. patens e_gw1.144.75.1 Physcomitrella patens subsp. patens e_gw1.182.33.1 Physcomitrella patens subsp. patens e_gw1.8.135.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1940021 Physcomitrella patens subsp. patens estExt_Genewise1.C_850012 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_80130 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3500017 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3720066 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_80062 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_38000175 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_8000115 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_97000058 Physcomitrella patens subsp. patens 28644.m000931 Ricinus communis 28659.m000075 Ricinus communis 29485.m000142 Ricinus communis 29520.m000091 Ricinus communis 29520.m000092 Ricinus communis 29610.m000388 Ricinus communis 29610.m000391 Ricinus communis 29751.m001822 Ricinus communis 29751.m001824 Ricinus communis 29751.m001825 Ricinus communis 29751.m001827 Ricinus communis 29751.m001844 Ricinus communis 29751.m001845 Ricinus communis 29751.m001846 Ricinus communis 29869.m001176 Ricinus communis 29929.m004750 Ricinus communis thaps1_ua_kg.chr_15000027 Thalassiosira pseudonana CCMP1335 XP_002949415 Volvox carteri f. nagariensis XP_002954211 Volvox carteri f. nagariensis XP_002954217 Volvox carteri f. nagariensis XP_002954285 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11527 1.6E-58 1 156 No hit NA SUPERFAMILY SSF49764 3.8E-44 30 156 IPR008978 HSP20-like chaperone Pfam PF00011 1.1E-33 52 155 IPR002068 Alpha crystallin/Hsp20 domain ProSiteProfiles PS01031 26.0 52 141 IPR002068 Alpha crystallin/Hsp20 domain
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787