Basic information
Locus name	AT5G62020
Alias	AT-HSFB2A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	AT-HSFB2A; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2B; transcription factor/ transcription repressor (TAIR:AT4G11660.1); Has 1335 Blast hits to 1331 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 318; Plants - 455; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT5G62020.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_133111	Accession Taxon NP_199197 Arabidopsis thaliana NP_201008 ( AT5G62020 ) Arabidopsis thaliana 29851.m002407 Ricinus communis 29912.m005397 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10015 8.5E-65 5 217 No hit NA SMART SM00415 1.1E-54 20 113 IPR000232 Heat shock factor (HSF)-type, DNA-binding SUPERFAMILY SSF46785 3.9E-34 21 113 No hit NA Pfam PF00447 6.8E-34 24 115 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 5.4E-19 24 47 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 5.4E-19 62 74 IPR000232 Heat shock factor (HSF)-type, DNA-binding ProSitePatterns PS00434 NA 63 87 IPR000232 Heat shock factor (HSF)-type, DNA-binding PRINTS PR00056 5.4E-19 75 87 IPR000232 Heat shock factor (HSF)-type, DNA-binding Coils Coil NA 172 200 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787