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Locus name | AT3G54420 |
Alias | ATEP3 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Others | Effect for Senescence | unclear | Gene Description | ATEP3; FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1822 Blast hits to 1634 proteins in 370 species: Archae - 0; Bacteria - 351; Metazoa - 33; Fungi - 115; Plants - 1227; Viruses - 18; Other Eukaryotes - 78 (source: NCBI BLink). | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Pathway | | Sequence | AT3G54420.1 | Genomic | mRNA | CDS | Protein
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Ortholog Group | |
| Ortholog Groups: OG5_140133 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR22595 | 9.5E-200 | 1 | 273 | No hit | NA | PIRSF | PIRSF001060 | 7.0E-154 | 5 | 273 | IPR016283 | Glycoside hydrolase, family 19 | SUPERFAMILY | SSF57016 | 3.3E-10 | 27 | 64 | IPR001002 | Chitin-binding, type 1 | Pfam | PF00187 | 1.4E-9 | 28 | 61 | IPR001002 | Chitin-binding, type 1 | ProSiteProfiles | PS50941 | 9.6 | 28 | 63 | IPR001002 | Chitin-binding, type 1 | SMART | SM00270 | 4.2E-9 | 30 | 61 | IPR001002 | Chitin-binding, type 1 | PRINTS | PR00451 | 2.0E-5 | 31 | 39 | IPR001002 | Chitin-binding, type 1 | ProSitePatterns | PS00026 | NA | 33 | 52 | IPR018371 | Chitin-binding, type 1, conserved site | PRINTS | PR00451 | 2.0E-5 | 39 | 46 | IPR001002 | Chitin-binding, type 1 | PRINTS | PR00451 | 2.0E-5 | 46 | 53 | IPR001002 | Chitin-binding, type 1 | SUPERFAMILY | SSF53955 | 2.4E-77 | 71 | 273 | IPR023346 | Lysozyme-like domain | Pfam | PF00182 | 8.2E-76 | 75 | 273 | IPR000726 | Glycoside hydrolase, family 19, catalytic | ProSitePatterns | PS00773 | NA | 92 | 114 | IPR000726 | Glycoside hydrolase, family 19, catalytic |
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| Localization | extracellular | Evidence | SUBAcon | Pubmed ID | 23180787 |
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