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Locus name | AT4G11360 |
Alias | RHA1B |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:RING-H2 finger protein |
Effect for Senescence | Unclear |
Gene Description | Encodes a putative RING-H2 finger protein RHA1b. |
Evidence | Molecular evidence: SSH and Northern [Ref 1] |
References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
Gene Ontology | |
Sequence | AT4G11360.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT4G11360.1 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -31.6 kcal/mol p-value: 0.001307
position: 23 target 5' U U C U 3' UC CUCCUCUCUAUCUUU UC AG GAGGAGGGAUAGGAG AG miRNA 3' G U 5'
target: AT4G11360.1 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -31.6 kcal/mol p-value: 0.002019
position: 23 target 5' U U C U 3' UC CUCCUCUCUAUCUUU UC AG GAGGAGGGAUAGGAG AG miRNA 3' G U 5'
target: AT4G11360.1 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -31.6 kcal/mol p-value: 0.001378
position: 23 target 5' U U C U 3' UC CUCCUCUCUAUCUUU UC AG GAGGAGGGAUAGGAG AG miRNA 3' G U 5'
target: AT4G11360.1 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -31.6 kcal/mol p-value: 0.001296
position: 23 target 5' U U C U 3' UC CUCCUCUCUAUCUUU UC AG GAGGAGGGAUAGGAG AG miRNA 3' G U 5'
target: AT4G11360.1 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -31.6 kcal/mol p-value: 0.001990
position: 23 target 5' U U C U 3' UC CUCCUCUCUAUCUUU UC AG GAGGAGGGAUAGGAG AG miRNA 3' G U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_212587 | |
Cross Link | |
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Mutant Image | |
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