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Locus name | AT4G30360 |
Alias | ATCNGC17 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Nutrient recycling | Effect for Senescence | unclear | Gene Description | ATCNGC17; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT2G24610.1); Has 2660 Blast hits to 2569 proteins in 197 species: Archae - 0; Bacteria - 33; Metazoa - 1306; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink). | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT4G30360.1 | Genomic | mRNA | CDS | Protein
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Ortholog Group | |
| Ortholog Groups: OG5_131975 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR10217 | 0.0 | 2 | 717 | No hit | NA | SUPERFAMILY | SSF81324 | 2.0E-30 | 76 | 276 | No hit | NA | PRINTS | PR01463 | 1.2E-5 | 140 | 149 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | 1.2E-5 | 259 | 269 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | SUPERFAMILY | SSF81324 | 2.0E-30 | 343 | 403 | No hit | NA | PRINTS | PR01463 | 1.2E-5 | 350 | 367 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | 1.2E-5 | 376 | 387 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | 1.2E-5 | 394 | 403 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | SUPERFAMILY | SSF51206 | 2.0E-36 | 411 | 603 | IPR018490 | Cyclic nucleotide-binding-like | PRINTS | PR01463 | 1.2E-5 | 444 | 451 | IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | ProSiteProfiles | PS50042 | 10.3 | 481 | 564 | IPR000595 | Cyclic nucleotide-binding domain | SMART | SM00100 | 1.2E-11 | 481 | 612 | IPR000595 | Cyclic nucleotide-binding domain | Pfam | PF00027 | 1.5E-8 | 503 | 597 | IPR000595 | Cyclic nucleotide-binding domain | Coils | Coil | NA | 643 | 664 | No hit | NA |
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| Localization | plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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