Basic information
Locus name	AT4G01010
Alias	ATCNGC13
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ATCNGC13; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G01340.1); Has 2637 Blast hits to 2514 proteins in 212 species: Archae - 0; Bacteria - 37; Metazoa - 1329; Fungi - 17; Plants - 662; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process ion transport transmembrane transport cellular component membrane molecular function ion channel activity
Sequence	AT4G01010.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131975	Accession Taxon NP_001118537 Arabidopsis thaliana NP_173051 Arabidopsis thaliana NP_173408 Arabidopsis thaliana NP_180393 Arabidopsis thaliana NP_182167 Arabidopsis thaliana NP_190384 Arabidopsis thaliana NP_192010 ( AT4G01010 ) Arabidopsis thaliana NP_194765 Arabidopsis thaliana NP_194785 Arabidopsis thaliana NP_196991 Arabidopsis thaliana NP_200125 Arabidopsis thaliana NP_200602 Arabidopsis thaliana NP_563625 Arabidopsis thaliana NP_565560 Arabidopsis thaliana NP_566075 Arabidopsis thaliana NP_850056 Arabidopsis thaliana NP_850454 Arabidopsis thaliana NP_851209 Arabidopsis thaliana NP_974953 Arabidopsis thaliana NP_001047485 Oryza sativa Japonica Group NP_001048351 Oryza sativa Japonica Group NP_001050768 Oryza sativa Japonica Group NP_001057767 Oryza sativa Japonica Group NP_001063911 Oryza sativa Japonica Group NP_001066227 Oryza sativa Japonica Group e_gw1.37.28.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1830065 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_68000055 Physcomitrella patens subsp. patens gw1.211.12.1 Physcomitrella patens subsp. patens 27538.m000318 Ricinus communis 29687.m000571 Ricinus communis 29742.m001433 Ricinus communis 29822.m003360 Ricinus communis 29848.m004476 Ricinus communis 30131.m006865 Ricinus communis 30147.m013975 Ricinus communis 30169.m006518 Ricinus communis estExt_fgenesh1_pg.C_chr_40508 Thalassiosira pseudonana CCMP1335 XP_002959718 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10217 6.6E-292 47 655 No hit NA SUPERFAMILY SSF81324 3.6E-30 71 269 No hit NA Pfam PF00520 3.4E-15 123 391 IPR005821 Ion transport domain SUPERFAMILY SSF81324 3.6E-30 336 396 No hit NA SUPERFAMILY SSF51206 2.9E-34 401 596 IPR018490 Cyclic nucleotide-binding-like ProSiteProfiles PS50042 11.9 474 558 IPR000595 Cyclic nucleotide-binding domain SMART SM00100 1.2E-11 474 605 IPR000595 Cyclic nucleotide-binding domain Pfam PF00027 1.3E-5 495 589 IPR000595 Cyclic nucleotide-binding domain
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787