Basic information
Locus name	AT3G57520
Alias	ATSIP2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	Arabidopsis thaliana seed imbibition 2 (AtSIP2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G55740.1); Has 272 Blast hits to 257 proteins in 79 species: Archae - 9; Bacteria - 35; Metazoa - 0; Fungi - 51; Plants - 171; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G57520.1 | Genomic | mRNA | CDS | Protein AT3G57520.2 | Genomic | mRNA | CDS | Protein AT3G57520.3 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_132749	Accession Taxon NP_001031910 Arabidopsis thaliana NP_175970 Arabidopsis thaliana NP_191311 ( AT3G57520 ) Arabidopsis thaliana NP_197525 Arabidopsis thaliana NP_850715 Arabidopsis thaliana NP_851044 Arabidopsis thaliana NP_974451 Arabidopsis thaliana 205571 Chlamydomonas reinhardtii ACO69369 Micromonas sp. RCC299 NP_001051653 Oryza sativa Japonica Group NP_001053108 Oryza sativa Japonica Group NP_001056942 Oryza sativa Japonica Group NP_001059166 Oryza sativa Japonica Group NP_001062133 Oryza sativa Japonica Group e_gw1.06.00.67.1 Ostreococcus tauri e_gw1.2626.1.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_100087 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_80005 Physcomitrella patens subsp. patens 28525.m000270 Ricinus communis 28543.m000400 Ricinus communis 29761.m000419 Ricinus communis 29805.m001530 Ricinus communis 30147.m013837 Ricinus communis e_gw1.1.117.1 Thalassiosira pseudonana CCMP1335 XP_002959323 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31268 0.0 2 656 No hit NA Pfam PF05691 0.0 7 656 IPR008811 Raffinose synthase SUPERFAMILY SSF51445 7.8E-57 196 245 IPR017853 Glycoside hydrolase, superfamily SUPERFAMILY SSF51445 7.8E-57 276 313 IPR017853 Glycoside hydrolase, superfamily SUPERFAMILY SSF51445 7.8E-57 355 520 IPR017853 Glycoside hydrolase, superfamily