Basic information
Locus name	AT3G43860
Alias	ATGH9A1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	Arabidopsis thaliana Glycosyl Hydrolase 9A4 (AtGH9A4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G02290.1); Has 1126 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 326; Metazoa - 139; Fungi - 14; Plants - 619; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function catalytic activity hydrolase activity, hydrolyzing O-glycosyl compounds
Pathway	KEGG map00500 (EC 3.2.1.4) MetaCyc PWY-1001
Sequence	AT3G43860.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_190272	Accession Taxon NP_189972 ( AT3G43860 ) Arabidopsis thaliana NP_001048297 Oryza sativa Japonica Group 29739.m003631 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22298 5.6E-242 10 485 No hit NA Pfam PF00759 1.7E-142 34 481 IPR001701 Glycoside hydrolase, family 9 SUPERFAMILY SSF48208 4.5E-144 34 484 IPR008928 Six-hairpin glycosidase-like
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787