Basic information
Locus name	AT3G52115
Alias	ATGR1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1 (ATGR1); INVOLVED IN: meiotic DNA double-strand break processing, response to ionizing radiation, gamete generation, response to DNA damage stimulus; EXPRESSED IN: bud, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: DNA repair protein Sae2/CtIP (InterPro:IPR013882); BEST Arabidopsis thaliana protein match is: protein transport protein-related (TAIR:AT5G52280.1); Has 21644 Blast hits to 13620 proteins in 822 species: Archae - 315; Bacteria - 1493; Metazoa - 12610; Fungi - 1407; Plants - 578; Viruses - 76; Other Eukaryotes - 5165 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G52115.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_176848	Accession Taxon NP_850683 ( AT3G52115 ) Arabidopsis thaliana NP_001058070 Oryza sativa Japonica Group 30152.m002398 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23340 3.6E-112 1 501 No hit NA Coils Coil NA 66 101 No hit NA Coils Coil NA 194 278 No hit NA Pfam PF08573 4.9E-13 516 585 IPR013882 DNA repair protein Sae2/CtIP
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787