Basic information
Locus name	AT5G07250
Alias	ATRBL3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3 (ATRBL3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 3136 Blast hits to 3136 proteins in 845 species: Archae - 73; Bacteria - 1541; Metazoa - 465; Fungi - 86; Plants - 178; Viruses - 0; Other Eukaryotes - 793 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process proteolysis cellular component integral to membrane molecular function serine-type endopeptidase activity
Sequence	AT5G07250.1 | Genomic | mRNA | CDS | Protein AT5G07250.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127224	Accession Taxon NP_001077528 Arabidopsis thaliana NP_001077973 Arabidopsis thaliana NP_001119182 Arabidopsis thaliana NP_172735 Arabidopsis thaliana NP_173900 Arabidopsis thaliana NP_176500 Arabidopsis thaliana NP_180469 Arabidopsis thaliana NP_196342 ( AT5G07250 ) Arabidopsis thaliana NP_566989 Arabidopsis thaliana NP_850698 Arabidopsis thaliana 149870 Chlamydomonas reinhardtii 193698 Chlamydomonas reinhardtii ACO63770 Micromonas sp. RCC299 NP_001048759 Oryza sativa Japonica Group NP_001053596 Oryza sativa Japonica Group NP_001062422 Oryza sativa Japonica Group NP_001063349 Oryza sativa Japonica Group NP_001063723 Oryza sativa Japonica Group NP_001065094 Oryza sativa Japonica Group NP_001068547 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_05.0001000151 Ostreococcus tauri e_gw1.84.66.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_5090005 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2950038 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_980052 Physcomitrella patens subsp. patens 27732.m000278 Ricinus communis 28223.m000098 Ricinus communis 30147.m014289 Ricinus communis e_gw1.12.102.1 Thalassiosira pseudonana CCMP1335 e_gw1.18.150.1 Thalassiosira pseudonana CCMP1335 e_gw1.3.321.1 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_20017 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_30193 Thalassiosira pseudonana CCMP1335 XP_002950229 Volvox carteri f. nagariensis XP_002952281 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22936 1.1E-73 40 298 IPR002610 Peptidase S54, rhomboid SUPERFAMILY SSF144091 7.1E-30 52 79 No hit NA SUPERFAMILY SSF144091 7.1E-30 117 271 No hit NA Pfam PF01694 7.0E-37 129 267 IPR022764 Peptidase S54, rhomboid domain