Basic information
Locus name	AT4G39780
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT4G39780.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_156446	Accession Taxon NP_177931 Arabidopsis thaliana NP_179810 Arabidopsis thaliana NP_195688 ( AT4G39780 ) Arabidopsis thaliana NP_001048142 Oryza sativa Japonica Group e_gw1.187.17.1 Physcomitrella patens subsp. patens e_gw1.335.26.1 Physcomitrella patens subsp. patens 28206.m000104 Ricinus communis 29908.m006005 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31657 4.2E-76 1 271 No hit NA ProSiteProfiles PS51032 23.5 92 149 IPR001471 AP2/ERF domain SMART SM00380 6.4E-37 92 155 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 7.9E-24 92 149 IPR016177 DNA-binding, integrase-type Pfam PF00847 3.1E-18 93 142 IPR001471 AP2/ERF domain PRINTS PR00367 1.9E-11 93 104 IPR001471 AP2/ERF domain PRINTS PR00367 1.9E-11 115 131 IPR001471 AP2/ERF domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787