Basic information
Locus name	AT5G39850
Alias	RPS9C
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	40S ribosomal protein S9 (RPS9C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component intracellular molecular function RNA binding rRNA binding
Sequence	AT5G39850.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126983	Accession Taxon NP_001119227 Arabidopsis thaliana NP_197024 Arabidopsis thaliana NP_198801 ( AT5G39850 ) Arabidopsis thaliana CMJ125C Cyanidioschyzon merolae strain 10D 195593 Chlamydomonas reinhardtii NP_113198 Guillardia theta ACO61867 Micromonas sp. RCC299 NP_001049004 Oryza sativa Japonica Group NP_001068232 Oryza sativa Japonica Group NP_001068233 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_09.00010103 Ostreococcus tauri estExt_Genewise1.C_140020 Physcomitrella patens subsp. patens estExt_Genewise1.C_910107 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_130238 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_470044 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_540112 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_223000015 Physcomitrella patens subsp. patens 29813.m001450 Ricinus communis 29822.m003493 Ricinus communis 30147.m014108 Ricinus communis estExt_thaps1_ua_kg.C_chr_40118 Thalassiosira pseudonana CCMP1335 XP_002958222 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11831 4.6E-128 1 197 IPR022801 Ribosomal protein S4/S9 Pfam PF00163 5.2E-27 7 108 IPR001912 Ribosomal protein S4/S9, N-terminal TIGRFAM TIGR01018 1.1E-64 11 166 IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal SUPERFAMILY SSF55174 2.4E-34 12 153 No hit NA ProSitePatterns PS00632 NA 107 131 IPR018079 Ribosomal protein S4, conserved site Pfam PF01479 8.4E-14 109 153 IPR002942 RNA-binding S4 domain ProSiteProfiles PS50889 10.3 109 183 IPR002942 RNA-binding S4 domain SMART SM00363 6.8E-5 109 173 IPR002942 RNA-binding S4 domain
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787