Leaf Senescence DataBase

Basic information

Locus name

AT3G15290

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

3-hydroxybutyryl-CoA dehydrogenase, putative; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, 3-hydroxybutyryl-CoA dehydrogenase activity, binding, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (TAIR:AT4G29010.1); Has 10012 Blast hits to 9491 proteins in 1060 species: Archae - 201; Bacteria - 5136; Metazoa - 507; Fungi - 164; Plants - 85; Viruses - 0; Other Eukaryotes - 3919 (source: NCBI BLink).

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	fatty acid metabolic process oxidation-reduction process
molecular function	3-hydroxyacyl-CoA dehydrogenase activity NAD+ binding

Pathway

KEGG	map00062 (EC 4.2.1.17) map00071 (EC 5.1.2.3) map00120 (EC 1.1.1.35) map00280 (EC 4.2.1.17) map00281 (EC 4.2.1.17) map00310 (EC 4.2.1.17) map00362 (EC 4.2.1.17) map00380 (EC 4.2.1.17) map00410 (EC 4.2.1.17) map00592 (EC 4.2.1.17) map00623 (EC 1.1.1.35) map00627 (EC 4.2.1.17) map00640 (EC 4.2.1.17) map00650 (EC 5.1.2.3) map00903 (EC 4.2.1.17) map00930 (EC 4.2.1.17)
MetaCyc	PWY-1361 PWY-5109 PWY-5136 PWY-5138 PWY-5789 PWY-6435 PWY-735

Sequence

AT3G15290.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_127943

Accession	Taxon
NP_188147 ( AT3G15290 )	Arabidopsis thaliana
CMC137C	Cyanidioschyzon merolae strain 10D
79407	Chlamydomonas reinhardtii
NP_001044515	Oryza sativa Japonica Group
e_gw1.12.331.1	Physcomitrella patens subsp. patens
29668.m000313	Ricinus communis
fgenesh1_pg.C_chr_19a_19000125	Thalassiosira pseudonana CCMP1335
XP_002959892	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR23309	8.0E-140	1	290	No hit	NA
PIRSF	PIRSF000105	1.2E-72	1	294	IPR022694	3-hydroxyacyl-CoA dehydrogenase
SUPERFAMILY	SSF51735	1.9E-54	1	185	No hit	NA
Pfam	PF02737	3.9E-64	7	184	IPR006176	3-hydroxyacyl-CoA dehydrogenase, NAD binding
ProSitePatterns	PS00067	NA	184	209	IPR006180	3-hydroxyacyl-CoA dehydrogenase, conserved site
Pfam	PF00725	3.1E-36	187	283	IPR006108	3-hydroxyacyl-CoA dehydrogenase, C-terminal
SUPERFAMILY	SSF48179	9.4E-32	187	289	IPR008927	6-phosphogluconate dehydrogenase, C-terminal-like

Subcellular Localization

Localization

peroxisome

Evidence

SUBAcon

Pubmed ID

23180787