Basic information
Locus name	AT5G14320
Alias	CS13
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	30S ribosomal protein S13, chloroplast (CS13); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast, putative (TAIR:AT1G77750.1); Has 5735 Blast hits to 5735 proteins in 1744 species: Archae - 113; Bacteria - 2978; Metazoa - 171; Fungi - 134; Plants - 251; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process translation cellular component intracellular molecular function RNA binding structural constituent of ribosome
Sequence	AT5G14320.1 | Genomic | mRNA | CDS | Protein AT5G14320.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126668	Accession Taxon NP_173692 Arabidopsis thaliana NP_177898 Arabidopsis thaliana NP_192718 Arabidopsis thaliana NP_564434 Arabidopsis thaliana NP_568299 ( AT5G14320 ) Arabidopsis thaliana CMB004C Cyanidioschyzon merolae strain 10D CMV183C Cyanidioschyzon merolae strain 10D 155649 Chlamydomonas reinhardtii 195627 Chlamydomonas reinhardtii ACO67006 Micromonas sp. RCC299 ACO68297 Micromonas sp. RCC299 NP_001051020 Oryza sativa Japonica Group NP_001051541 Oryza sativa Japonica Group NP_001059006 Oryza sativa Japonica Group NP_001059007 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_14.00010240 Ostreococcus tauri fgenesh1_pg.C_Chr_03.0001000419 Ostreococcus tauri e_gw1.258.35.1 Physcomitrella patens subsp. patens e_gw1.258.85.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2150093 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_140326 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_140334 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2150087 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2420069 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_720141 Physcomitrella patens subsp. patens gw1.16.132.1 Physcomitrella patens subsp. patens 29647.m002061 Ricinus communis 29863.m001096 Ricinus communis 29908.m006203 Ricinus communis estExt_Genewise1.C_chr_20015 Thalassiosira pseudonana CCMP1335 XP_002946223 Volvox carteri f. nagariensis XP_002956916 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10871 7.6E-47 20 114 IPR001892 Ribosomal protein S13 SUPERFAMILY SSF46946 2.8E-13 48 120 IPR010979 Ribosomal protein S13-like, H2TH Pfam PF00416 2.1E-14 49 115 IPR001892 Ribosomal protein S13 ProSiteProfiles PS50159 14.9 50 114 IPR001892 Ribosomal protein S13 Coils Coil NA 91 112 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787