Basic information
Locus name	AT3G26100
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Ran GTPase binding
Effect for Senescence	unclear
Gene Description	regulator of chromosome condensation (RCC1) family protein
Evidence	Molecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT3G26100.1 | Genomic | mRNA | CDS | Protein AT3G26100.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G26100.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -30.7 kcal/mol  p-value: 0.005741  position:  1448  target 5' A        G            U 3'             UUGCUGCU GUUAUUGCUACC              AAUGGUGG CGAUGACGAUGG   miRNA  3'                       U 5'  target: AT3G26100.2  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -30.7 kcal/mol  p-value: 0.005795  position:  1467  target 5' A        G            U 3'             UUGCUGCU GUUAUUGCUACC              AAUGGUGG CGAUGACGAUGG   miRNA  3'                       U 5'
Ortholog Group
Ortholog Groups: OG5_178298	Accession Taxon NP_566789 Arabidopsis thaliana NP_974362 ( AT3G26100 ) Arabidopsis thaliana NP_001066582 Oryza sativa Japonica Group 29929.m004772 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22870 0.0 1 421 No hit NA PRINTS PR00633 7.4E-14 45 58 IPR000408 Regulator of chromosome condensation, RCC1 SUPERFAMILY SSF50985 3.6E-75 46 380 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Pfam PF00415 9.7E-11 61 110 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 14.0 62 113 IPR000408 Regulator of chromosome condensation, RCC1 PRINTS PR00633 7.4E-14 64 80 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 3.3E-6 113 164 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 10.6 114 167 IPR000408 Regulator of chromosome condensation, RCC1 PRINTS PR00633 7.4E-14 154 170 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 1.3E-6 167 216 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 11.3 168 220 IPR000408 Regulator of chromosome condensation, RCC1 PRINTS PR00633 7.4E-14 170 184 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 10.7 224 277 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 8.2E-5 226 274 IPR000408 Regulator of chromosome condensation, RCC1 ProSitePatterns PS00626 NA 264 274 IPR000408 Regulator of chromosome condensation, RCC1 PRINTS PR00633 7.4E-14 267 285 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 1.4E-14 277 326 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 13.7 278 329 IPR000408 Regulator of chromosome condensation, RCC1 PRINTS PR00633 7.4E-14 325 346 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 3.2E-5 329 379 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 10.4 330 396 IPR000408 Regulator of chromosome condensation, RCC1 Pfam PF00415 5.8E-6 396 428 IPR000408 Regulator of chromosome condensation, RCC1 ProSiteProfiles PS50012 9.3 397 432 IPR000408 Regulator of chromosome condensation, RCC1