Basic information
Locus name	AT1G59870
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:transporter
Effect for Senescence	Unclear
Gene Description	ATP binding cassette transporter
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	cellular component membrane molecular function ATP binding ATPase activity
Sequence	AT1G59870.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G59870.1  miRNA: ath-miR158a miRNA: ath-miR158a mfe: -23.0 kcal/mol  p-value: 0.021146  position:  2870  target 5' A      A     C  A     G 3'             GUUUUG CUGCG UU UGGGA              CGAAAC GAUGU AA ACCCU   miRNA  3' A      A                5'  target: AT1G59870.1  miRNA: ath-miR858 miRNA: ath-miR858 mfe: -24.0 kcal/mol  p-value: 0.157236  position:  2701  target 5' C    G U         A   A 3'             AGGU G GCAGGCAAU AGA              UCCA C UGUCUGUUG UUU   miRNA  3' U    G U         C     5'
Ortholog Group
Ortholog Groups: OG5_126574	Accession Taxon NP_172973 Arabidopsis thaliana NP_173005 Arabidopsis thaliana NP_176196 ( AT1G59870 ) Arabidopsis thaliana NP_176867 Arabidopsis thaliana NP_178241 Arabidopsis thaliana NP_180259 Arabidopsis thaliana NP_180555 Arabidopsis thaliana NP_181179 Arabidopsis thaliana NP_181265 Arabidopsis thaliana NP_190916 Arabidopsis thaliana NP_193258 Arabidopsis thaliana NP_194472 Arabidopsis thaliana NP_564383 Arabidopsis thaliana NP_566543 Arabidopsis thaliana NP_680692 Arabidopsis thaliana NP_680693 Arabidopsis thaliana NP_680694 Arabidopsis thaliana NP_683617 Arabidopsis thaliana NP_849921 Arabidopsis thaliana NP_849922 Arabidopsis thaliana NP_973392 Arabidopsis thaliana CMD134C Cyanidioschyzon merolae strain 10D CMD135C Cyanidioschyzon merolae strain 10D CMO130C Cyanidioschyzon merolae strain 10D CMR291C Cyanidioschyzon merolae strain 10D CMS467C Cyanidioschyzon merolae strain 10D 103211 Chlamydomonas reinhardtii 115842 Chlamydomonas reinhardtii 131711 Chlamydomonas reinhardtii 147235 Chlamydomonas reinhardtii 150517 Chlamydomonas reinhardtii 169525 Chlamydomonas reinhardtii 60710 Chlamydomonas reinhardtii 79831 Chlamydomonas reinhardtii ACO61491 Micromonas sp. RCC299 ACO65667 Micromonas sp. RCC299 ACO66759 Micromonas sp. RCC299 ACO67072 Micromonas sp. RCC299 ACO69748 Micromonas sp. RCC299 NP_001041878 Oryza sativa Japonica Group NP_001042955 Oryza sativa Japonica Group NP_001043538 Oryza sativa Japonica Group NP_001043539 Oryza sativa Japonica Group NP_001043541 Oryza sativa Japonica Group NP_001044111 Oryza sativa Japonica Group NP_001046259 Oryza sativa Japonica Group NP_001046678 Oryza sativa Japonica Group NP_001057850 Oryza sativa Japonica Group NP_001059813 Oryza sativa Japonica Group NP_001061077 Oryza sativa Japonica Group NP_001061702 Oryza sativa Japonica Group NP_001066875 Oryza sativa Japonica Group NP_001068174 Oryza sativa Japonica Group 1400010200 Ostreococcus tauri e_gw1.04.00.113.1 Ostreococcus tauri e_gw1.10.00.120.1 Ostreococcus tauri gw1.07.00.7.1 Ostreococcus tauri gw1.10.00.71.1 Ostreococcus tauri e_gw1.15.314.1 Physcomitrella patens subsp. patens e_gw1.160.7.1 Physcomitrella patens subsp. patens e_gw1.169.25.1 Physcomitrella patens subsp. patens e_gw1.170.3.1 Physcomitrella patens subsp. patens e_gw1.23.7.1 Physcomitrella patens subsp. patens e_gw1.255.7.1 Physcomitrella patens subsp. patens e_gw1.3.69.1 Physcomitrella patens subsp. patens e_gw1.36.207.1 Physcomitrella patens subsp. patens e_gw1.65.47.1 Physcomitrella patens subsp. patens e_gw1.66.222.1 Physcomitrella patens subsp. patens e_gw1.72.203.1 Physcomitrella patens subsp. patens e_gw1.72.206.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3750035 Physcomitrella patens subsp. patens estExt_Genewise1.C_590033 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_120016 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_150083 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1800028 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2700057 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_536000002 Physcomitrella patens subsp. patens 27496.m000097 Ricinus communis 27985.m000850 Ricinus communis 28219.m000091 Ricinus communis 29333.m001087 Ricinus communis 29588.m000881 Ricinus communis 29588.m000882 Ricinus communis 29588.m000883 Ricinus communis 29588.m000884 Ricinus communis 29681.m001339 Ricinus communis 29738.m001021 Ricinus communis 29766.m000121 Ricinus communis 29791.m000550 Ricinus communis 29791.m000551 Ricinus communis 29827.m002659 Ricinus communis 29848.m004673 Ricinus communis 29889.m003385 Ricinus communis 29901.m000408 Ricinus communis 29912.m005565 Ricinus communis 29912.m005566 Ricinus communis 29912.m005567 Ricinus communis 29912.m005568 Ricinus communis 29912.m005569 Ricinus communis 29932.m000597 Ricinus communis 29953.m000435 Ricinus communis 30128.m008881 Ricinus communis 30131.m006867 Ricinus communis 30146.m003511 Ricinus communis 30146.m003512 Ricinus communis 30146.m003513 Ricinus communis 30146.m003514 Ricinus communis e_gw1.23x33.5.1 Thalassiosira pseudonana CCMP1335 estExt_Genewise1.C_chr_30509 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_17000019 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_22000026 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_3000068 Thalassiosira pseudonana CCMP1335 XP_002947559 Volvox carteri f. nagariensis XP_002952574 Volvox carteri f. nagariensis XP_002955315 Volvox carteri f. nagariensis XP_002959059 Volvox carteri f. nagariensis XP_002959452 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50893 13.9 171 444 IPR003439 ABC transporter-like SUPERFAMILY SSF52540 1.4E-31 178 262 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 7.8E-8 196 428 IPR003593 AAA+ ATPase domain SUPERFAMILY SSF52540 1.4E-31 312 459 IPR027417 P-loop containing nucleoside triphosphate hydrolase PANTHER PTHR19241 0.0 397 1469 No hit NA Pfam PF01061 5.4E-42 523 734 IPR013525 ABC-2 type transporter Pfam PF08370 1.0E-23 740 803 IPR013581 Plant PDR ABC transporter associated ProSiteProfiles PS50893 14.4 867 1119 IPR003439 ABC transporter-like SUPERFAMILY SSF52540 6.5E-37 889 1105 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 9.3E-12 904 1096 IPR003593 AAA+ ATPase domain Pfam PF00005 1.4E-9 919 1047 IPR003439 ABC transporter-like Pfam PF01061 1.6E-56 1193 1406 IPR013525 ABC-2 type transporter
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787