Basic information
Locus name	AT4G19890
Alias	AtS40-3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	promote
Gene Description	AtS40-3 is induced during senescence and is also regulated in response to dark treatment, ABA, salicylic acid and pathogen attack.
Evidence	Genetic evidence:Mutant and transgene [Ref 1]
References	1: Fischer-Kilbienski I, Miao Y, Roitsch T, Zschiesche W, Humbeck K, Krupinska K Nuclear targeted AtS40 modulates senescence associated gene expression in Arabidopsis thaliana during natural development and in darkness. Plant Mol. Biol. 2010 Jul;73(4-5):379-90
Sequence	AT4G19890.1 | Genomic | mRNA | CDS | Protein
Mutant information
Mutant name	s40-3a
Mutant/Transgenic	mutant
Ecotype	Col-0
Mutagenesis type	T-DNA insertion_knock out
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24015 8.9E-158 2 696 No hit NA ProSiteProfiles PS51375 8.2 146 180 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.4 181 215 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.4 184 213 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.9E-4 184 217 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.3 216 250 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.0 219 248 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 5.5E-4 219 251 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.0 251 285 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.0 254 283 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.2E-4 254 286 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 12.7 286 320 IPR002885 Pentatricopeptide repeat Pfam PF13041 6.1E-16 290 334 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.7E-9 290 322 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.3 321 356 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.9E-6 323 357 IPR002885 Pentatricopeptide repeat SUPERFAMILY SSF81901 1.7E-10 333 560 No hit NA Pfam PF13041 2.9E-18 356 405 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 13.2 357 391 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.6E-9 359 393 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.9 392 426 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.9E-8 395 427 IPR002885 Pentatricopeptide repeat Pfam PF13041 1.4E-10 426 475 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.8 427 461 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 0.0 429 462 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.0 462 496 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.8E-4 464 497 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.7 497 531 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.0 502 528 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 5.6E-4 502 532 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 13.7 532 566 IPR002885 Pentatricopeptide repeat Pfam PF13041 1.6E-17 535 580 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 3.0E-13 535 568 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 13.5 567 601 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 6.2E-9 569 601 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 5.3 634 668 IPR002885 Pentatricopeptide repeat