Basic information
Locus name	LOC_Os09g30400
Alias	OsWRKY80
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:WRKY
Effect for Senescence	Unclear
Gene Description	WRKY transcription factor in Rice (Oryza sativa L. ssp. indica).Up-regulation of this gene is also observed after dark-induced senescence and drought stress
Evidence	Molecular evidence:representational difference analysis [Ref 1]
References	1: Ricachenevsky FK, Sperotto RA, Menguer PK, Fett JP Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence. Mol. Biol. Rep. 2010 Dec;37(8):3735-45
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	LOC_Os09g30400.1 | Genomic | mRNA | CDS | Protein LOC_Os09g30400.2 | Genomic | mRNA | CDS | Protein LOC_Os09g30400.3 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os09g30400.1  miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol  p-value: 0.007047  position: 960  target 5' G        C     U      G  3'             GCAGAGCG AGGGC GCGAGG                 CGUUUUGU UCCCG CGUUUU      miRNA  3' A              U         5'  target: LOC_Os09g30400.2  miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol  p-value: 0.006670  position: 839  target 5' G        C     U      G  3'             GCAGAGCG AGGGC GCGAGG                 CGUUUUGU UCCCG CGUUUU      miRNA  3' A              U         5'  target: LOC_Os09g30400.3  miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol  p-value: 0.005167  position: 351  target 5' G        C     U      G  3'             GCAGAGCG AGGGC GCGAGG                 CGUUUUGU UCCCG CGUUUU      miRNA  3' A              U         5'
Ortholog Group
Ortholog Groups: OG5_170302	Accession Taxon NP_200438 Arabidopsis thaliana NP_001062148 Oryza sativa Japonica Group NP_001063497 ( LOC_Os09g30400 ) Oryza sativa Japonica Group 28966.m000524 Ricinus communis XP_002951986 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31221 4.7E-187 2 633 No hit NA SUPERFAMILY SSF118290 5.8E-29 425 493 IPR003657 DNA-binding WRKY ProSiteProfiles PS50811 37.9 428 493 IPR003657 DNA-binding WRKY Pfam PF03106 2.2E-30 433 491 IPR003657 DNA-binding WRKY SMART SM00774 3.3E-38 433 492 IPR003657 DNA-binding WRKY