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Locus name | AT2G42790 |
Alias | CS |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Lipid/Carbohydrate metabolism |
Effect for Senescence | Unclear |
Gene Description | citrate synthase |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Taylor L, Nunes-Nesi A, Parsley K, Leiss A, Leach G, Coates S, Wingler A, Fernie AR, Hibberd JMCytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content.Plant J. 2010 May 1;62(4):641-52 |
Gene Ontology | |
Pathway | |
Sequence | AT2G42790.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT2G42790.1 miRNA: ath-miR159a miRNA: ath-miR159a mfe: -26.2 kcal/mol p-value: 0.049905
position: 2554 target 5' A U G U 3' UGG GUUCCUUUUAAUC CAG AUC CGAGGGAAGUUAG GUU miRNA 3' U U 5'
target: AT2G42790.1 miRNA: ath-miR159b miRNA: ath-miR159b mfe: -25.2 kcal/mol p-value: 0.081499
position: 2555 target 5' U U G U 3' GG GUUCCUUUUAAUC CAG UC CGAGGGAAGUUAG GUU miRNA 3' U U U 5'
target: AT2G42790.1 miRNA: ath-miR159c miRNA: ath-miR159c mfe: -27.3 kcal/mol p-value: 0.042028
position: 2555 target 5' U U G U 3' GG GUUCCUUUUAAUC CAG CC CGAGGGAAGUUAG GUU miRNA 3' U U U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_128590 | |
Cross Link | |
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Localization | peroxisome |
Evidence | SUBAcon |
Pubmed ID | 23180787 |