Basic information
Locus name	AT4G35830
Alias	AH
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	Unclear
Gene Description	aconitase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Taylor L, Nunes-Nesi A, Parsley K, Leiss A, Leach G, Coates S, Wingler A, Fernie AR, Hibberd JM Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. Plant J. 2010 May 1;62(4):641-52
Gene Ontology	biological process metabolic process
Pathway	KEGG map00290 (EC 4.2.1.33)
Sequence	AT4G35830.1 | Genomic | mRNA | CDS | Protein AT4G35830.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G35830.1  miRNA: ath-miR858 miRNA: ath-miR858 mfe: -25.1 kcal/mol  p-value: 0.067256  position:  1079  target 5' U                    C 3'             AAGGUUGA CAGGCAG GAG              UUCCAGCU GUCUGUU CUU   miRNA  3'          U       G   U 5'  target: AT4G35830.2  miRNA: ath-miR858 miRNA: ath-miR858 mfe: -25.1 kcal/mol  p-value: 0.070490  position:  1231  target 5' U                    C 3'             AAGGUUGA CAGGCAG GAG              UUCCAGCU GUCUGUU CUU   miRNA  3'          U       G   U 5'
Ortholog Group
Ortholog Groups: OG5_126691	Accession Taxon NP_001119125 Arabidopsis thaliana NP_178634 Arabidopsis thaliana NP_195308 ( AT4G35830 ) Arabidopsis thaliana NP_567763 Arabidopsis thaliana CMT561C Cyanidioschyzon merolae strain 10D 129025 Chlamydomonas reinhardtii ACO69045 Micromonas sp. RCC299 NP_001048898 Oryza sativa Japonica Group NP_001057461 Oryza sativa Japonica Group e_gw1.253.27.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1310098 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_283000055 Physcomitrella patens subsp. patens 27777.m000279 Ricinus communis 28554.m000043 Ricinus communis 29600.m000550 Ricinus communis 29784.m000362 Ricinus communis fgenesh1_pg.C_chr_1000590 Thalassiosira pseudonana CCMP1335 XP_002953876 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11670 0.0 1 898 IPR015937 Aconitase/isopropylmalate dehydratase SUPERFAMILY SSF53732 1.6E-233 17 632 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha TIGRFAM TIGR01341 0.0 23 896 IPR006249 Aconitase/iron regulatory protein 2 Pfam PF00330 8.9E-152 60 568 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 147 160 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 171 179 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 200 213 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 214 229 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 276 289 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 290 303 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 372 386 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha ProSitePatterns PS00450 NA 433 449 IPR018136 Aconitase family, 4Fe-4S cluster binding site PRINTS PR00415 2.6E-46 437 448 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha PRINTS PR00415 2.6E-46 499 512 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha ProSitePatterns PS01244 NA 499 512 IPR018136 Aconitase family, 4Fe-4S cluster binding site SUPERFAMILY SSF52016 6.1E-86 637 896 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Pfam PF00694 2.2E-44 697 825 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel
Subcellular Localization
Localization 1 Localization mitochondria Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol,mitochondrion Evidence SUBAcon Pubmed ID 23180787