Basic information
Locus name	LOC_Os01g05670
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Synaptic glycoprotein SC2, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process lipid metabolic process cellular component cytoplasm molecular function oxidoreductase activity, acting on the CH-CH group of donors
Pathway	Reactome REACT_22258
Sequence	LOC_Os01g05670.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g05670  miRNA: osa-miR1857-5p miRNA: osa-miR1857-5p mfe: -24.3 kcal/mol  p-value: 0.060509  position:  102  target 5' U  G      C      C     G 3'             CC UCGUGU CCGGAG GGCCG              GG AGUACG GGUUUU UUGGU   miRNA  3'           A      U       5'  target: LOC_Os01g05670  miRNA: osa-miR529b miRNA: osa-miR529b mfe: -27.6 kcal/mol  p-value: 0.004949  position:  57  target 5' C     C            C  G 3'             GAGCU U CUCUCUCUCU UC              UUCGA A GAGAGAGAGA AG   miRNA  3'       C U             A 5'
Ortholog Group
Ortholog Groups: OG5_127767	Accession Taxon NP_191096 Arabidopsis thaliana CMD146C Cyanidioschyzon merolae strain 10D 602 Chlamydomonas reinhardtii ACO64917 Micromonas sp. RCC299 NP_001042030 ( LOC_Os01g05670 ) Oryza sativa Japonica Group e_gw1.03.00.379.1 Ostreococcus tauri estExt_Genewise1.C_150332 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_15000263 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_54000031 Physcomitrella patens subsp. patens 30003.m000326 Ricinus communis XP_002946045 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10556 1.8E-142 1 310 No hit NA Pfam PF02544 4.6E-28 159 309 IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal ProSiteProfiles PS50244 22.6 199 280 IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal