Basic information
Locus name	LOC_Os01g51410
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Glycine dehydrogenase, mitochondrial precursor
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process glycine catabolic process glycine metabolic process oxidation-reduction process molecular function glycine dehydrogenase (decarboxylating) activity
Pathway	KEGG map00260 (EC 1.4.4.2)
Sequence	LOC_Os01g51410.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g51410  miRNA: osa-miR1424 miRNA: osa-miR1424 mfe: -27.5 kcal/mol  p-value: 0.025420  position:  357  target 5' G              A     G 3'             GCGAU GGCGUCGG GUGCG              UGUUA UCGUAGUC CACGU   miRNA  3'       G        A     A 5'  target: LOC_Os01g51410  miRNA: osa-miR1429-3p miRNA: osa-miR1429-3p mfe: -27.3 kcal/mol  p-value: 0.083030  position:  1232  target 5' U   G             G   A 3'             GGC AUGCAGACCCG G AGC              UUG UAUGUUUGGGC C UUG   miRNA  3' G               A G     5'  target: LOC_Os01g51410  miRNA: osa-miR2094-5p miRNA: osa-miR2094-5p mfe: -33.2 kcal/mol  p-value: 0.044053  position:  494  target 5' A   G    C            U 3'             CAU CA G GCCUGGCGGCCA              GUG GU C CGGAUCGUCGGU   miRNA  3'     G  C U              5'  target: LOC_Os01g51410  miRNA: osa-miR2098-3p miRNA: osa-miR2098-3p mfe: -26.2 kcal/mol  p-value: 0.082735  position:  717  target 5' C      G U         G   A 3'             GC CUC C GCUUGACGA GCC              CG GAG G CGAACUGUU UGG   miRNA  3'    U                   C 5'  target: LOC_Os01g51410  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -33.7 kcal/mol  p-value: 0.065730  position:  3054  target 5' G                   A  G 3'             UACGCU GCGUUCCCU GC GC              GUGCGA CGUAGGGGA CG CG   miRNA  3'        G         G  G    5'
Ortholog Group
Ortholog Groups: OG5_127334	Accession Taxon NP_001119106 Arabidopsis thaliana NP_180178 Arabidopsis thaliana NP_195027 Arabidopsis thaliana CMR282C Cyanidioschyzon merolae strain 10D 136984 Chlamydomonas reinhardtii ACO64735 Micromonas sp. RCC299 NP_001044046 ( LOC_Os01g51410 ) Oryza sativa Japonica Group NP_001058062 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_10.0001000067 Ostreococcus tauri estExt_Genewise1.C_150397 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2760055 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_150394 Physcomitrella patens subsp. patens 29794.m003324 Ricinus communis estExt_gwp_gw1.C_chr_30089 Thalassiosira pseudonana CCMP1335 XP_002956892 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11773 0.0 5 1033 IPR020581 Glycine cleavage system P protein Hamap MF_00711 24.0 66 1024 IPR003437 Glycine cleavage system P protein, homodimeric Pfam PF02347 5.6E-198 74 502 IPR020580 Glycine cleavage system P-protein, N-terminal SUPERFAMILY SSF53383 1.0E-98 75 501 IPR015424 Pyridoxal phosphate-dependent transferase TIGRFAM TIGR00461 0.0 75 1017 IPR003437 Glycine cleavage system P protein, homodimeric Pfam PF02347 1.2E-12 513 795 IPR020580 Glycine cleavage system P-protein, N-terminal SUPERFAMILY SSF53383 6.7E-102 521 954 IPR015424 Pyridoxal phosphate-dependent transferase Coils Coil NA 692 713 No hit NA SUPERFAMILY SSF53383 6.7E-102 997 1018 IPR015424 Pyridoxal phosphate-dependent transferase