Basic information
Locus name	LOC_Os01g52500
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	NADP-dependent malic enzyme, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process malate metabolic process oxidation-reduction process molecular function malate dehydrogenase (oxaloacetate-decarboxylating) activity malic enzyme activity
Pathway	KEGG map00620 (EC 1.1.1.38)
Sequence	LOC_Os01g52500.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g52500  miRNA: osa-miR1320 miRNA: osa-miR1320 mfe: -24.2 kcal/mol  p-value: 0.029757  position:  2459  target 5' A                A    G 3'             UGUGAAGUUCCUU GU UCCA              AUAUUUUAAGGAG CA AGGU   miRNA  3' G             G         5'  target: LOC_Os01g52500  miRNA: osa-miR159c miRNA: osa-miR159c mfe: -26.4 kcal/mol  p-value: 0.045320  position:  702  target 5' A       G         G  A 3'             GGGGCUU CCUUCAA C AA              CCUCGAG GGAAGUU G UU   miRNA  3' A               A G  A 5'  target: LOC_Os01g52500  miRNA: osa-miR159d miRNA: osa-miR159d mfe: -26.4 kcal/mol  p-value: 0.053872  position:  702  target 5' A       G         G  A 3'             GGGGCUU CCUUCAA C AA              CCUCGAG GGAAGUU G UU   miRNA  3' G               A G  A 5'  target: LOC_Os01g52500  miRNA: osa-miR159e miRNA: osa-miR159e mfe: -26.9 kcal/mol  p-value: 0.037909  position:  701  target 5' A        G         G  A 3'             AGGGGCUU CCUUCAA C AA              UCCUCGAG GGAAGUU G UU   miRNA  3'                  A G  A 5'  target: LOC_Os01g52500  miRNA: osa-miR160a miRNA: osa-miR160a mfe: -30.9 kcal/mol  p-value: 0.043847  position:  261  target 5' G  G G G      G      U 3'             GG G G GGGGGG CGGGCG              CC U U UCCCUC GUCCGU   miRNA  3' A  G A G      G        5'  target: LOC_Os01g52500  miRNA: osa-miR160b miRNA: osa-miR160b mfe: -30.9 kcal/mol  p-value: 0.044683  position:  261  target 5' G  G G G      G      U 3'             GG G G GGGGGG CGGGCG              CC U U UCCCUC GUCCGU   miRNA  3' A  G A G      G        5'  target: LOC_Os01g52500  miRNA: osa-miR160c miRNA: osa-miR160c mfe: -30.9 kcal/mol  p-value: 0.039712  position:  261  target 5' G  G G G      G      U 3'             GG G G GGGGGG CGGGCG              CC U U UCCCUC GUCCGU   miRNA  3' A  G A G      G        5'  target: LOC_Os01g52500  miRNA: osa-miR160d miRNA: osa-miR160d mfe: -30.9 kcal/mol  p-value: 0.043787  position:  261  target 5' G  G G G      G      U 3'             GG G G GGGGGG CGGGCG              CC U U UCCCUC GUCCGU   miRNA  3' A  G A G      G        5'  target: LOC_Os01g52500  miRNA: osa-miR160e miRNA: osa-miR160e mfe: -30.9 kcal/mol  p-value: 0.045123  position:  261  target 5' G  G G G      G      U 3'             GG G G GGGGGG CGGGCG              CC U U UCCCUC GUCCGU   miRNA  3' G  G A G      G        5'  target: LOC_Os01g52500  miRNA: osa-miR1861n miRNA: osa-miR1861n mfe: -29.3 kcal/mol  p-value: 0.054506  position:  747  target 5' G G            C  C A   U 3'             U GGCUUCUGCCAC AG A UCG              A UCGAGGACGGUG UC U AGC   miRNA  3' G G            U          5'  target: LOC_Os01g52500  miRNA: osa-miR2103 miRNA: osa-miR2103 mfe: -34.0 kcal/mol  p-value: 0.013989  position:  247  target 5' A   C  G               G 3'             GAG CG GC UGGGGGGGGGGG              CUC GC CG GCCUCUCCCUUU   miRNA  3' G      G  U              5'  target: LOC_Os01g52500  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -31.8 kcal/mol  p-value: 0.004084  position:  258  target 5' G               G    G 3'             GGGGGGGGGGGGGGG GCGG              CUUCUUCUCUCUCCC UGUC   miRNA  3'                 A      5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23406 0.0 1 565 No hit NA PIRSF PIRSF000106 3.3E-291 16 575 IPR001891 Malic oxidoreductase SUPERFAMILY SSF53223 1.2E-102 36 308 No hit NA Pfam PF00390 1.4E-77 119 298 IPR012301 Malic enzyme, N-terminal PRINTS PR00072 2.5E-85 124 148 IPR001891 Malic oxidoreductase PRINTS PR00072 2.5E-85 184 213 IPR001891 Malic oxidoreductase PRINTS PR00072 2.5E-85 220 242 IPR001891 Malic oxidoreductase PRINTS PR00072 2.5E-85 280 298 IPR001891 Malic oxidoreductase PRINTS PR00072 2.5E-85 305 321 IPR001891 Malic oxidoreductase ProSitePatterns PS00331 NA 305 321 IPR015884 Malic enzyme, conserved site Pfam PF03949 1.8E-90 309 562 IPR012302 Malic enzyme, NAD-binding SMART SM00919 4.0E-113 309 562 IPR012302 Malic enzyme, NAD-binding SUPERFAMILY SSF51735 8.3E-92 309 568 No hit NA PRINTS PR00072 2.5E-85 336 352 IPR001891 Malic oxidoreductase PRINTS PR00072 2.5E-85 439 455 IPR001891 Malic oxidoreductase