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Locus name | LOC_Os01g59600 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling:Macromolecule metabolism |
Effect for Senescence | Unclear |
Gene Description | Proteasome subunit alpha type 3, putative, expressed |
Evidence | Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1] |
References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
Gene Ontology | |
Pathway | |
Sequence | LOC_Os01g59600.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: LOC_Os01g59600 miRNA: osa-miR1846c-3p miRNA: osa-miR1846c-3p mfe: -35.5 kcal/mol p-value: 0.004934
position: 216 target 5' G G A U 3' CGG GAGUGGAUCGGGG UC GUC CUCGUCUGGCCCC AG miRNA 3' G G U 5'
target: LOC_Os01g59600 miRNA: osa-miR2275a miRNA: osa-miR2275a mfe: -25.1 kcal/mol p-value: 0.028119
position: 465 target 5' A U C U U 3' GA GAUG UGGAGGGA CUAA CU CUAU ACCUCCUU GGUU miRNA 3' A A U U 5'
target: LOC_Os01g59600 miRNA: osa-miR2275b miRNA: osa-miR2275b mfe: -25.1 kcal/mol p-value: 0.026498
position: 465 target 5' A U C U U 3' GA GAUG UGGAGGGA CUAA CU CUAU ACCUCCUU GGUU miRNA 3' A A U U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_127755 | |
Cross Link | |
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