Basic information
Locus name	LOC_Os01g59600
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Proteasome subunit alpha type 3, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process cellular component proteasome core complex, alpha-subunit complex molecular function endopeptidase activity threonine-type endopeptidase activity
Pathway	Reactome REACT_11045 REACT_13 REACT_13635 REACT_152 REACT_1538 REACT_383 REACT_578 REACT_6185 REACT_6850
Sequence	LOC_Os01g59600.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g59600  miRNA: osa-miR1846c-3p miRNA: osa-miR1846c-3p mfe: -35.5 kcal/mol  p-value: 0.004934  position:  216  target 5' G   G             A  U 3'             CGG GAGUGGAUCGGGG UC              GUC CUCGUCUGGCCCC AG   miRNA  3' G   G                U 5'  target: LOC_Os01g59600  miRNA: osa-miR2275a miRNA: osa-miR2275a mfe: -25.1 kcal/mol  p-value: 0.028119  position:  465  target 5' A  U    C        U    U 3'             GA GAUG UGGAGGGA CUAA              CU CUAU ACCUCCUU GGUU   miRNA  3' A       A        U    U 5'  target: LOC_Os01g59600  miRNA: osa-miR2275b miRNA: osa-miR2275b mfe: -25.1 kcal/mol  p-value: 0.026498  position:  465  target 5' A  U    C        U    U 3'             GA GAUG UGGAGGGA CUAA              CU CUAU ACCUCCUU GGUU   miRNA  3' A       A        U    U 5'
Ortholog Group
Ortholog Groups: OG5_127755	Accession Taxon NP_180270 Arabidopsis thaliana CMO197C Cyanidioschyzon merolae strain 10D 183771 Chlamydomonas reinhardtii NP_113179 Guillardia theta ACO64819 Micromonas sp. RCC299 NP_001044588 ( LOC_Os01g59600 ) Oryza sativa Japonica Group NP_001055904 Oryza sativa Japonica Group gw1.10.00.326.1 Ostreococcus tauri estExt_fgenesh1_pg.C_2140021 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_720023 Physcomitrella patens subsp. patens 29977.m000262 Ricinus communis estExt_Genewise1.C_chr_10857 Thalassiosira pseudonana CCMP1335 XP_002952672 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF56235 1.4E-73 3 239 No hit NA PANTHER PTHR11599 3.2E-153 4 245 No hit NA Pfam PF10584 1.4E-14 8 30 IPR000426 Proteasome, alpha-subunit, N-terminal domain ProSitePatterns PS00388 NA 8 30 IPR000426 Proteasome, alpha-subunit, N-terminal domain SMART SM00948 2.9E-10 8 30 IPR000426 Proteasome, alpha-subunit, N-terminal domain Pfam PF00227 1.9E-50 31 216 IPR001353 Proteasome, subunit alpha/beta ProSiteProfiles PS51475 51.0 35 216 IPR023332 Proteasome A-type subunit Coils Coil NA 229 250 No hit NA