Basic information
Locus name	LOC_Os02g32520
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	ERD1 protein, chloroplast precursor, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function ATP binding
Sequence	LOC_Os02g32520.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g32520  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -35.6 kcal/mol  p-value: 0.024207  position:  411  target 5' C     C         C    C  G 3'             UGCGC CG GCGCCG GCGG GG              ACGUG GC CGCGGC CGCU CC   miRNA  3'       C  G                5'  target: LOC_Os02g32520  miRNA: osa-miR444d miRNA: osa-miR444d mfe: -27.3 kcal/mol  p-value: 0.063857  position:  2875  target 5' U       G             C 3'             GAUUUGC AAGAAGGCUAUGA              UUGAACG UUCUUUCGGUGUU   miRNA  3' G                       5'
Ortholog Group
Ortholog Groups: OG5_126636	Accession Taxon NP_565083 Arabidopsis thaliana NP_565586 Arabidopsis thaliana NP_566912 Arabidopsis thaliana NP_567437 Arabidopsis thaliana NP_568314 Arabidopsis thaliana NP_568746 Arabidopsis thaliana NP_568750 Arabidopsis thaliana CMC125C Cyanidioschyzon merolae strain 10D CMI251C Cyanidioschyzon merolae strain 10D CMS128C Cyanidioschyzon merolae strain 10D CMV107C Cyanidioschyzon merolae strain 10D 107731 Chlamydomonas reinhardtii 172454 Chlamydomonas reinhardtii 195417 Chlamydomonas reinhardtii 195422 Chlamydomonas reinhardtii 195423 Chlamydomonas reinhardtii ACO62257 Micromonas sp. RCC299 ACO65528 Micromonas sp. RCC299 ACO66808 Micromonas sp. RCC299 ACO68882 Micromonas sp. RCC299 NP_001046096 Oryza sativa Japonica Group NP_001046997 ( LOC_Os02g32520 ) Oryza sativa Japonica Group NP_001050410 Oryza sativa Japonica Group NP_001052665 Oryza sativa Japonica Group NP_001056066 Oryza sativa Japonica Group NP_001066442 Oryza sativa Japonica Group NP_001067671 Oryza sativa Japonica Group e_gw1.07.00.42.1 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_14.00010074 Ostreococcus tauri estExt_genewise1.C_Chr_01.00010063 Ostreococcus tauri estExt_gwp_GeneWisePlus.C_Chr_05.00010425 Ostreococcus tauri e_gw1.23.107.1 Physcomitrella patens subsp. patens e_gw1.3.110.1 Physcomitrella patens subsp. patens e_gw1.62.104.1 Physcomitrella patens subsp. patens e_gw1.91.131.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3000044 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_880113 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_2520006 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_810007 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1960009 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_270106 Physcomitrella patens subsp. patens 29630.m000784 Ricinus communis 29848.m004552 Ricinus communis 30138.m003984 Ricinus communis 30147.m014373 Ricinus communis 30147.m014420 Ricinus communis e_gw1.18.13.1 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_90020 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_30158 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_22000029 Thalassiosira pseudonana CCMP1335 XP_002946377 Volvox carteri f. nagariensis XP_002946539 Volvox carteri f. nagariensis XP_002947715 Volvox carteri f. nagariensis XP_002949981 Volvox carteri f. nagariensis XP_002950861 Volvox carteri f. nagariensis XP_002951745 Volvox carteri f. nagariensis XP_002952540 Volvox carteri f. nagariensis XP_002957032 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11638 0.0 62 933 No hit NA SUPERFAMILY SSF81923 2.3E-17 75 217 No hit NA Pfam PF02861 9.2E-5 88 132 IPR004176 Clp, N-terminal Pfam PF02861 1.1E-8 170 216 IPR004176 Clp, N-terminal SUPERFAMILY SSF52540 9.9E-62 265 518 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 1.0E-8 303 451 IPR003593 AAA+ ATPase domain Pfam PF00004 4.0E-8 308 423 IPR003959 ATPase, AAA-type, core ProSitePatterns PS00870 NA 402 414 IPR018368 Chaperonin ClpA/B, conserved site SUPERFAMILY SSF52540 8.6E-74 601 914 IPR027417 P-loop containing nucleoside triphosphate hydrolase Pfam PF07724 7.8E-53 651 824 IPR013093 ATPase, AAA-2 SMART SM00382 3.1E-9 652 832 IPR003593 AAA+ ATPase domain PRINTS PR00300 1.2E-37 656 674 IPR001270 Chaperonin ClpA/B ProSitePatterns PS00871 NA 686 704 IPR001270 Chaperonin ClpA/B PRINTS PR00300 1.2E-37 701 719 IPR001270 Chaperonin ClpA/B PRINTS PR00300 1.2E-37 730 748 IPR001270 Chaperonin ClpA/B PRINTS PR00300 1.2E-37 763 777 IPR001270 Chaperonin ClpA/B Pfam PF10431 4.5E-22 831 909 IPR019489 Clp ATPase, C-terminal SMART SM01086 7.1E-29 831 921 IPR019489 Clp ATPase, C-terminal