Basic information
Locus name	LOC_Os02g39970
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	F-box protein FBL2, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function protein binding
Sequence	LOC_Os02g39970.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g39970  miRNA: osa-miR1428a-5p miRNA: osa-miR1428a-5p mfe: -25.8 kcal/mol  p-value: 0.013856  position:  1443  target 5' U     U  G      G     A 3'             GGCCU CG AAUUUG AAAGC              CCGGA GC UUAAAC UUUUG   miRNA  3'       C         G     C 5'  target: LOC_Os02g39970  miRNA: osa-miR444b miRNA: osa-miR444b mfe: -26.0 kcal/mol  p-value: 0.047056  position:  330  target 5' C       A     U     U 3'             AGCUUGA AUGGC GCUGC              UCGAACU UGUUG UGACG   miRNA  3' U       C     U     U 5'  target: LOC_Os02g39970  miRNA: osa-miR444c miRNA: osa-miR444c mfe: -26.0 kcal/mol  p-value: 0.050191  position:  330  target 5' C       A     U     U 3'             AGCUUGA AUGGC GCUGC              UCGAACU UGUUG UGACG   miRNA  3' U       C     U     U 5'  target: LOC_Os02g39970  miRNA: osa-miR444f miRNA: osa-miR444f mfe: -25.7 kcal/mol  p-value: 0.101692  position:  1941  target 5' G       C             U 3'             AAGC UG AGGCGACGG UGC              UUCG AC UCCGUUGUU ACG   miRNA  3'      A            G   U 5'
Ortholog Group
Ortholog Groups: OG5_126657	Accession Taxon NP_563980 Arabidopsis thaliana NP_683486 Arabidopsis thaliana CMO214C Cyanidioschyzon merolae strain 10D 153692 Chlamydomonas reinhardtii 171527 Chlamydomonas reinhardtii 171534 Chlamydomonas reinhardtii ACO61101 Micromonas sp. RCC299 ACO61736 Micromonas sp. RCC299 ACO63899 Micromonas sp. RCC299 ACO64271 Micromonas sp. RCC299 ACO64340 Micromonas sp. RCC299 ACO65032 Micromonas sp. RCC299 ACO65033 Micromonas sp. RCC299 ACO65696 Micromonas sp. RCC299 ACO65697 Micromonas sp. RCC299 ACO66885 Micromonas sp. RCC299 ACO67361 Micromonas sp. RCC299 ACO67425 Micromonas sp. RCC299 ACO67897 Micromonas sp. RCC299 ACO68043 Micromonas sp. RCC299 ACO68616 Micromonas sp. RCC299 ACO68709 Micromonas sp. RCC299 ACO68712 Micromonas sp. RCC299 ACO69003 Micromonas sp. RCC299 ACO69004 Micromonas sp. RCC299 ACO69248 Micromonas sp. RCC299 ACO69332 Micromonas sp. RCC299 ACO69887 Micromonas sp. RCC299 ACO69946 Micromonas sp. RCC299 NP_001042644 Oryza sativa Japonica Group NP_001047326 Oryza sativa Japonica Group NP_001047418 ( LOC_Os02g39970 ) Oryza sativa Japonica Group NP_001053240 Oryza sativa Japonica Group NP_001062881 Oryza sativa Japonica Group NP_001067488 Oryza sativa Japonica Group NP_001067491 Oryza sativa Japonica Group NP_001067497 Oryza sativa Japonica Group NP_001067498 Oryza sativa Japonica Group e_gw1.107.152.1 Physcomitrella patens subsp. patens e_gw1.107.163.1 Physcomitrella patens subsp. patens e_gw1.107.32.1 Physcomitrella patens subsp. patens e_gw1.107.43.1 Physcomitrella patens subsp. patens e_gw1.107.50.1 Physcomitrella patens subsp. patens e_gw1.107.61.1 Physcomitrella patens subsp. patens e_gw1.11.37.1 Physcomitrella patens subsp. patens e_gw1.113.68.1 Physcomitrella patens subsp. patens e_gw1.158.79.1 Physcomitrella patens subsp. patens e_gw1.158.81.1 Physcomitrella patens subsp. patens e_gw1.167.75.1 Physcomitrella patens subsp. patens e_gw1.167.77.1 Physcomitrella patens subsp. patens e_gw1.17.48.1 Physcomitrella patens subsp. patens e_gw1.17.54.1 Physcomitrella patens subsp. patens e_gw1.176.36.1 Physcomitrella patens subsp. patens e_gw1.176.9.1 Physcomitrella patens subsp. patens e_gw1.180.95.1 Physcomitrella patens subsp. patens e_gw1.2.64.1 Physcomitrella patens subsp. patens e_gw1.2.73.1 Physcomitrella patens subsp. patens e_gw1.202.8.1 Physcomitrella patens subsp. patens e_gw1.214.15.1 Physcomitrella patens subsp. patens e_gw1.234.32.1 Physcomitrella patens subsp. patens e_gw1.238.1.1 Physcomitrella patens subsp. patens e_gw1.248.49.1 Physcomitrella patens subsp. patens e_gw1.30.98.1 Physcomitrella patens subsp. patens e_gw1.31.139.1 Physcomitrella patens subsp. patens e_gw1.35.78.1 Physcomitrella patens subsp. patens e_gw1.374.20.1 Physcomitrella patens subsp. patens e_gw1.385.18.1 Physcomitrella patens subsp. patens e_gw1.409.27.1 Physcomitrella patens subsp. patens e_gw1.415.11.1 Physcomitrella patens subsp. patens e_gw1.44.51.1 Physcomitrella patens subsp. patens e_gw1.508.19.1 Physcomitrella patens subsp. patens e_gw1.65.52.1 Physcomitrella patens subsp. patens e_gw1.814.5.1 Physcomitrella patens subsp. patens e_gw1.85.24.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1130079 Physcomitrella patens subsp. patens estExt_Genewise1.C_350021 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1070156 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1800080 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_300001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_40159 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_287000004 Physcomitrella patens subsp. patens gw1.107.30.1 Physcomitrella patens subsp. patens gw1.107.35.1 Physcomitrella patens subsp. patens gw1.124.68.1 Physcomitrella patens subsp. patens gw1.132.58.1 Physcomitrella patens subsp. patens gw1.169.28.1 Physcomitrella patens subsp. patens gw1.176.35.1 Physcomitrella patens subsp. patens gw1.2.104.1 Physcomitrella patens subsp. patens gw1.246.11.1 Physcomitrella patens subsp. patens gw1.345.4.1 Physcomitrella patens subsp. patens gw1.39.176.1 Physcomitrella patens subsp. patens gw1.40.93.1 Physcomitrella patens subsp. patens gw1.44.174.1 Physcomitrella patens subsp. patens 29841.m002923 Ricinus communis 29850.m000272 Ricinus communis 29910.m000938 Ricinus communis gw1.12.125.1 Thalassiosira pseudonana CCMP1335 XP_002956701 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23125 8.8E-280 31 537 No hit NA SUPERFAMILY SSF52047 2.0E-51 127 465 No hit NA SMART SM00367 650.0 135 159 IPR006553 Leucine-rich repeat, cysteine-containing subtype SMART SM00367 19.0 184 209 IPR006553 Leucine-rich repeat, cysteine-containing subtype Pfam PF13516 0.7 233 256 No hit NA SMART SM00367 4.0 233 258 IPR006553 Leucine-rich repeat, cysteine-containing subtype ProSiteProfiles PS51450 5.5 235 259 IPR001611 Leucine-rich repeat Pfam PF13855 2.1E-10 259 318 No hit NA SMART SM00367 73.0 259 282 IPR006553 Leucine-rich repeat, cysteine-containing subtype ProSiteProfiles PS51450 5.8 260 280 IPR001611 Leucine-rich repeat Pfam PF13516 0.0 330 351 No hit NA ProSiteProfiles PS51450 7.4 332 352 IPR001611 Leucine-rich repeat SMART SM00367 72.0 354 378 IPR006553 Leucine-rich repeat, cysteine-containing subtype Pfam PF13516 0.0 356 375 No hit NA ProSiteProfiles PS51450 5.6 356 376 IPR001611 Leucine-rich repeat Pfam PF13306 1.0E-4 402 511 IPR026906 Leucine rich repeat 5 SMART SM00367 110.0 402 426 IPR006553 Leucine-rich repeat, cysteine-containing subtype SUPERFAMILY SSF52058 3.7E-18 423 565 No hit NA SMART SM00367 240.0 427 450 IPR006553 Leucine-rich repeat, cysteine-containing subtype ProSiteProfiles PS51450 5.3 428 448 IPR001611 Leucine-rich repeat SMART SM00367 10.0 498 523 IPR006553 Leucine-rich repeat, cysteine-containing subtype ProSiteProfiles PS51450 5.1 500 524 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.7 549 569 IPR001611 Leucine-rich repeat