Basic information
Locus name	LOC_Os02g49800
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Aspartic proteinase Asp1 precursor, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process proteolysis molecular function aspartic-type endopeptidase activity
Sequence	LOC_Os02g49800.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g49800  miRNA: osa-miR168b miRNA: osa-miR168b mfe: -33.2 kcal/mol  p-value: 0.020226  position:  1824  target 5' A   A               A 3'             UUC GA CUGCACCAAGCC              AGG CU GACGUGGUUCGG   miRNA  3' A   G  C            A 5'  target: LOC_Os02g49800  miRNA: osa-miR1846a-3p miRNA: osa-miR1846a-3p mfe: -32.9 kcal/mol  p-value: 0.007583  position:  356  target 5' C   C G   C          G  G 3'             CCG G GGG GGGGGCGGGG CG              GGC C CUC CUCUUGCCCC GU   miRNA  3'       G              A    5'  target: LOC_Os02g49800  miRNA: osa-miR1846b-3p miRNA: osa-miR1846b-3p mfe: -32.9 kcal/mol  p-value: 0.011611  position:  356  target 5' C   C G   C          G  G 3'             CCG G GGG GGGGGCGGGG CG              GGC C CUC CUCUUGCCCC GU   miRNA  3'       G              A    5'  target: LOC_Os02g49800  miRNA: osa-miR1846d-3p miRNA: osa-miR1846d-3p mfe: -40.8 kcal/mol  p-value: 0.000973  position:  181  target 5' G      G            C 3'             CC CCC GCGGCGCCGGAU              GG GGG CGCCGCGGCCUA   miRNA  3'    A   A            U 5'  target: LOC_Os02g49800  miRNA: osa-miR1865-5p miRNA: osa-miR1865-5p mfe: -30.5 kcal/mol  p-value: 0.009179  position:  440  target 5' C      C C               U 3'             UCGGGG G UCGCCGUCGC GGCA              AGCUUC U AGUGGUAGUG UCGU   miRNA  3' C      U            A      5'  target: LOC_Os02g49800  miRNA: osa-miR2103 miRNA: osa-miR2103 mfe: -33.7 kcal/mol  p-value: 0.013056  position:  362  target 5' G     G G       C    G 3'             GGGCG G GCGGGGG GGAG              CUCGC C UGCCUCU CCUU   miRNA  3' G     G G       C    U 5'  target: LOC_Os02g49800  miRNA: osa-miR408 miRNA: osa-miR408 mfe: -32.0 kcal/mol  p-value: 0.016274  position:  358  target 5' C  G    C        G G   A 3'             GC GGGG GGGGGCGG G CGG              CG UCCC UCUCCGUC C GUC   miRNA  3'    G    U        A       5'
Ortholog Group
Ortholog Groups: OG5_156334	Accession Taxon NP_001077691 Arabidopsis thaliana NP_564539 Arabidopsis thaliana NP_001048015 ( LOC_Os02g49800 ) Oryza sativa Japonica Group NP_001057353 Oryza sativa Japonica Group e_gw1.318.8.1 Physcomitrella patens subsp. patens e_gw1.369.22.1 Physcomitrella patens subsp. patens gw1.83.56.1 Physcomitrella patens subsp. patens 30174.m008702 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13683 1.4E-108 78 567 IPR001461 Peptidase A1 SUPERFAMILY SSF50630 3.3E-88 196 561 IPR021109 Aspartic peptidase Pfam PF00026 9.2E-26 202 555 IPR001461 Peptidase A1 PRINTS PR00792 1.7E-5 209 229 IPR001461 Peptidase A1 ProSitePatterns PS00141 NA 218 229 IPR001969 Peptidase aspartic, active site PRINTS PR00792 1.7E-5 423 434 IPR001461 Peptidase A1 ProSitePatterns PS00141 NA 423 434 IPR001969 Peptidase aspartic, active site PRINTS PR00792 1.7E-5 532 547 IPR001461 Peptidase A1