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| Locus name | LOC_Os03g17600 |
| Organism | Rice (Oryza sativa) |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling:Macromolecule metabolism |
| Effect for Senescence | Unclear |
| Gene Description | UPF0308 protein, chloroplast precursor, putative, expressed |
| Evidence | Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1] |
| References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
| Sequence | LOC_Os03g17600.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction  | |
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| Details | | target: LOC_Os03g17600
miRNA: osa-miR1437
miRNA: osa-miR1437
mfe: -33.0 kcal/mol
p-value: 0.005176
position: 255
target 5' G A G C U 3'
GG G C AG UGCGGCGCCGG
UC C G UC ACGCCGCGGCC
miRNA 3' G A G A U 5'
target: LOC_Os03g17600
miRNA: osa-miR2104
miRNA: osa-miR2104
mfe: -34.4 kcal/mol
p-value: 0.010886
position: 87
target 5' G G A A 3'
CGCGC CGC UCCCC U CCGC
GUGCG GCG AGGGG G GGCG
miRNA 3' A U A C 5'
target: LOC_Os03g17600
miRNA: osa-miR396g
miRNA: osa-miR396g
mfe: -29.1 kcal/mol
p-value: 0.003000
position: 239
target 5' G G G 3'
CCG UCGGGAGGGCC G GGA
GGC AGUUCUUUCGG C CCU
miRNA 3' A A A 5'
target: LOC_Os03g17600
miRNA: osa-miR396h
miRNA: osa-miR396h
mfe: -29.1 kcal/mol
p-value: 0.005166
position: 239
target 5' G G G 3'
CCG UCGGGAGGGCC G GGA
GGC AGUUCUUUCGG C CCU
miRNA 3' A A A 5'
target: LOC_Os03g17600
miRNA: osa-miR396i
miRNA: osa-miR396i
mfe: -29.1 kcal/mol
p-value: 0.003857
position: 239
target 5' G G G 3'
CCG UCGGGAGGGCC G GGA
GGC AGUUCUUUCGG C CCU
miRNA 3' A A A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_132943 | |
| Cross Link | |
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