Basic information
Locus name	LOC_Os03g51080
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Glutamate decarboxylase, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process carboxylic acid metabolic process glutamate metabolic process molecular function carboxy-lyase activity glutamate decarboxylase activity pyridoxal phosphate binding
Pathway	KEGG map00250 (EC 4.1.1.15) map00410 (EC 4.1.1.15) map00430 (EC 4.1.1.15) map00650 (EC 4.1.1.15) MetaCyc PWY-4321
Sequence	LOC_Os03g51080.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g51080  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -39.1 kcal/mol  p-value: 0.004637  position:  1674  target 5' C                   C 3'             GC CGC CGCGUCGGCGAG              CG GCG GCGCGGCCGCUC   miRNA  3' A  U   C            C 5'  target: LOC_Os03g51080  miRNA: osa-miR2102-3p miRNA: osa-miR2102-3p mfe: -35.9 kcal/mol  p-value: 0.015272  position:  651  target 5' G                    C 3'             GCCGUCGGAGUCGGCACUGU              CGGUGGCCUUGGCCGUGGUA   miRNA  3' G                    C 5'  target: LOC_Os03g51080  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -28.3 kcal/mol  p-value: 0.046623  position:  1357  target 5' G   U           U G    G 3'             UGC GAAGCAGGGGC G AGAA              ACG UUUUGUUCCCG C UUUU   miRNA  3'                 U G      5'  target: LOC_Os03g51080  miRNA: osa-miR395v miRNA: osa-miR395v mfe: -26.9 kcal/mol  p-value: 0.017549  position:  1259  target 5' A       A       C   G   A 3'             GGGUUCC GCCAGGU AUU CAC              CUCAAGG CGGUUUA UGA GUG   miRNA  3'                     A     5'
Ortholog Group
Ortholog Groups: OG5_129592	Accession Taxon NP_001117556 Arabidopsis thaliana NP_001154621 Arabidopsis thaliana NP_176771 Arabidopsis thaliana NP_178309 Arabidopsis thaliana NP_178310 Arabidopsis thaliana NP_188403 Arabidopsis thaliana NP_197235 Arabidopsis thaliana CMF072C Cyanidioschyzon merolae strain 10D NP_001049490 Oryza sativa Japonica Group NP_001051099 ( LOC_Os03g51080 ) Oryza sativa Japonica Group NP_001052915 Oryza sativa Japonica Group NP_001052919 Oryza sativa Japonica Group NP_001061998 Oryza sativa Japonica Group e_gw1.68.67.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_340034 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_80135 Physcomitrella patens subsp. patens gw1.10.264.1 Physcomitrella patens subsp. patens 27914.m000425 Ricinus communis 27914.m000427 Ricinus communis 29662.m000447 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11999 0.0 7 492 No hit NA SUPERFAMILY SSF53383 1.6E-133 13 444 IPR015424 Pyridoxal phosphate-dependent transferase TIGRFAM TIGR01788 1.6E-209 16 444 IPR010107 Glutamate decarboxylase Pfam PF00282 2.4E-104 33 381 IPR002129 Pyridoxal phosphate-dependent decarboxylase