Basic information
Locus name	LOC_Os03g60090
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Methylenetetrahydrofolate reductase, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process methionine metabolic process oxidation-reduction process molecular function methylenetetrahydrofolate reductase (NADPH) activity
Pathway	KEGG map00670 (EC 1.5.1.20) map00680 (EC 1.5.1.20) MetaCyc PWY-2201
Sequence	LOC_Os03g60090.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g60090  miRNA: osa-miR437 miRNA: osa-miR437 mfe: -21.2 kcal/mol  p-value: 0.073752  position:  1984  target 5' U    U        G      G 3'             AGUC GAUUUUUC UGACUU              UCAG UUGAAGAG AUUGAA   miRNA  3' U    U               A 5'  target: LOC_Os03g60090  miRNA: osa-miR444b miRNA: osa-miR444b mfe: -25.3 kcal/mol  p-value: 0.054454  position:  1799  target 5' U  U    U           A  U 3'             AG CUUG GGACAACGACU CA              UC GAAC UCUGUUGUUGA GU   miRNA  3' U                   C    5'  target: LOC_Os03g60090  miRNA: osa-miR444c miRNA: osa-miR444c mfe: -25.3 kcal/mol  p-value: 0.058608  position:  1799  target 5' U  U    U           A  U 3'             AG CUUG GGACAACGACU CA              UC GAAC UCUGUUGUUGA GU   miRNA  3' U                   C    5'
Ortholog Group
Ortholog Groups: OG5_128744	Accession Taxon NP_191556 Arabidopsis thaliana NP_566011 Arabidopsis thaliana NP_850723 Arabidopsis thaliana NP_850724 Arabidopsis thaliana CMT610C Cyanidioschyzon merolae strain 10D 111330 Chlamydomonas reinhardtii NP_001051683 ( LOC_Os03g60090 ) Oryza sativa Japonica Group estExt_Genewise1.C_5350001 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_320054 Physcomitrella patens subsp. patens 28966.m000545 Ricinus communis estExt_Genewise1.C_chr_20720 Thalassiosira pseudonana CCMP1335 gw1.1.133.1 Thalassiosira pseudonana CCMP1335 XP_002954594 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21091 0.0 3 588 No hit NA SUPERFAMILY SSF51730 9.8E-96 5 302 No hit NA Pfam PF02219 2.7E-123 6 301 IPR003171 Methylenetetrahydrofolate reductase TIGRFAM TIGR00677 2.7E-150 17 305 IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase