Basic information
Locus name	LOC_Os05g44310
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Vesicle-fusing ATPase, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function ATP binding nucleotide binding
Sequence	LOC_Os05g44310.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os05g44310  miRNA: osa-miR1846e miRNA: osa-miR1846e mfe: -30.7 kcal/mol  p-value: 0.049016  position:  2511  target 5' A       U            U 3'             GGU UCG GUCUCCUUGUUG              CCA GGC CGGAGGAGCAAC   miRNA  3' A   G                  5'  target: LOC_Os05g44310  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -35.3 kcal/mol  p-value: 0.027917  position:  2510  target 5' G G                   G 3'             A GUUCGUGUCUCCUUGUUGU              U CGAGCGUAGGGGAGCGGCG   miRNA  3' G G                     5'
Ortholog Group
Ortholog Groups: OG5_127665	Accession Taxon NP_192400 Arabidopsis thaliana CMQ243C Cyanidioschyzon merolae strain 10D 187761 Chlamydomonas reinhardtii ACO60714 Micromonas sp. RCC299 NP_001056063 ( LOC_Os05g44310 ) Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_03.00010329 Ostreococcus tauri estExt_gwp_gw1.C_3360033 Physcomitrella patens subsp. patens 29851.m002421 Ricinus communis gw1.3.71.1 Thalassiosira pseudonana CCMP1335 XP_002950018 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23078 0.0 8 739 No hit NA SUPERFAMILY SSF50692 3.7E-19 17 98 IPR009010 Aspartate decarboxylase-like domain SMART SM01073 9.4E-6 18 97 IPR003338 CDC48, N-terminal subdomain Pfam PF02359 1.2E-10 19 95 IPR003338 CDC48, N-terminal subdomain SUPERFAMILY SSF54585 7.2E-22 97 201 No hit NA Pfam PF02933 2.0E-5 123 161 IPR004201 CDC48, domain 2 SUPERFAMILY SSF52540 3.0E-53 229 495 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 1.1E-17 252 399 IPR003593 AAA+ ATPase domain Pfam PF00004 6.2E-39 256 396 IPR003959 ATPase, AAA-type, core ProSitePatterns PS00674 NA 367 385 IPR003960 ATPase, AAA-type, conserved site SUPERFAMILY SSF52540 1.3E-23 494 742 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 6.2E-7 532 670 IPR003593 AAA+ ATPase domain Pfam PF00004 3.6E-9 537 647 IPR003959 ATPase, AAA-type, core