Basic information
Locus name	LOC_Os07g29620
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	Serine carboxypeptidase-like precursor, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process proteolysis molecular function serine-type carboxypeptidase activity
Sequence	LOC_Os07g29620.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os07g29620  miRNA: osa-miR160a miRNA: osa-miR160a mfe: -30.9 kcal/mol  p-value: 0.034212  position:  490  target 5' C      G        C  C   U 3'             UGGC U ACGGGGGG CC GGC              ACCG A UGUCCCUC GG CCG   miRNA  3'      U             U   U 5'  target: LOC_Os07g29620  miRNA: osa-miR160b miRNA: osa-miR160b mfe: -30.9 kcal/mol  p-value: 0.034955  position:  490  target 5' C      G        C  C   U 3'             UGGC U ACGGGGGG CC GGC              ACCG A UGUCCCUC GG CCG   miRNA  3'      U             U   U 5'  target: LOC_Os07g29620  miRNA: osa-miR160c miRNA: osa-miR160c mfe: -30.9 kcal/mol  p-value: 0.030520  position:  490  target 5' C      G        C  C   U 3'             UGGC U ACGGGGGG CC GGC              ACCG A UGUCCCUC GG CCG   miRNA  3'      U             U   U 5'  target: LOC_Os07g29620  miRNA: osa-miR160d miRNA: osa-miR160d mfe: -30.9 kcal/mol  p-value: 0.033918  position:  490  target 5' C      G        C  C   U 3'             UGGC U ACGGGGGG CC GGC              ACCG A UGUCCCUC GG CCG   miRNA  3'      U             U   U 5'  target: LOC_Os07g29620  miRNA: osa-miR2906a miRNA: osa-miR2906a mfe: -36.0 kcal/mol  p-value: 0.005380  position:  347  target 5' A    G A A            C 3'             CCGG A G GCGGCGGCUCGU              GGUC U C CGCCGCCGGGCA   miRNA  3'      G   A            A 5'  target: LOC_Os07g29620  miRNA: osa-miR2906b miRNA: osa-miR2906b mfe: -36.0 kcal/mol  p-value: 0.005197  position:  347  target 5' A    G A A            C 3'             CCGG A G GCGGCGGCUCGU              GGUC U C CGCCGCCGGGCA   miRNA  3'      G   A            A 5'  target: LOC_Os07g29620  miRNA: osa-miR414 miRNA: osa-miR414 mfe: -26.8 kcal/mol  p-value: 0.006411  position:  1551  target 5' U        C            A 3'             GGA GAUG UGAUGAGG UGG              CCU CUAC ACUACUCC ACU   miRNA  3'     G    U        U     5'
Ortholog Group
Ortholog Groups: OG5_126663	Accession Taxon NP_178642 Arabidopsis thaliana NP_187652 Arabidopsis thaliana NP_189169 Arabidopsis thaliana NP_190087 Arabidopsis thaliana NP_190768 Arabidopsis thaliana NP_190769 Arabidopsis thaliana NP_190770 Arabidopsis thaliana NP_193027 Arabidopsis thaliana NP_197689 Arabidopsis thaliana 123507 Chlamydomonas reinhardtii 126671 Chlamydomonas reinhardtii 138087 Chlamydomonas reinhardtii 189662 Chlamydomonas reinhardtii ACO61127 Micromonas sp. RCC299 ACO66789 Micromonas sp. RCC299 NP_001045667 Oryza sativa Japonica Group NP_001050257 Oryza sativa Japonica Group NP_001052464 Oryza sativa Japonica Group NP_001054710 Oryza sativa Japonica Group NP_001059634 ( LOC_Os07g29620 ) Oryza sativa Japonica Group NP_001066510 Oryza sativa Japonica Group 1200010133 Ostreococcus tauri estExt_gwp_GeneWisePlus.C_Chr_18.00010009 Ostreococcus tauri e_gw1.131.120.1 Physcomitrella patens subsp. patens e_gw1.14.311.1 Physcomitrella patens subsp. patens e_gw1.2.134.1 Physcomitrella patens subsp. patens e_gw1.814.7.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1490109 Physcomitrella patens subsp. patens estExt_Genewise1.C_2620052 Physcomitrella patens subsp. patens estExt_Genewise1.C_590095 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_200000011 Physcomitrella patens subsp. patens 29589.m001244 Ricinus communis 29745.m000364 Ricinus communis 29816.m000680 Ricinus communis 29929.m004568 Ricinus communis 29929.m004569 Ricinus communis 29929.m004570 Ricinus communis 29929.m004571 Ricinus communis 29942.m000746 Ricinus communis 30178.m000856 Ricinus communis gw1.19c.16.1 Thalassiosira pseudonana CCMP1335 XP_002945957 Volvox carteri f. nagariensis XP_002955351 Volvox carteri f. nagariensis XP_002955599 Volvox carteri f. nagariensis XP_002958371 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF53474 2.8E-129 108 508 No hit NA Pfam PF00450 2.9E-128 109 508 IPR001563 Peptidase S10, serine carboxypeptidase PANTHER PTHR11802 2.1E-164 111 508 IPR001563 Peptidase S10, serine carboxypeptidase PRINTS PR00724 3.6E-26 177 189 IPR001563 Peptidase S10, serine carboxypeptidase PRINTS PR00724 3.6E-26 190 200 IPR001563 Peptidase S10, serine carboxypeptidase PRINTS PR00724 3.6E-26 225 250 IPR001563 Peptidase S10, serine carboxypeptidase ProSitePatterns PS00131 NA 239 246 IPR018202 Peptidase S10, serine carboxypeptidase, active site PRINTS PR00724 3.6E-26 478 491 IPR001563 Peptidase S10, serine carboxypeptidase ProSitePatterns PS00560 NA 478 495 IPR018202 Peptidase S10, serine carboxypeptidase, active site