Basic information
Locus name	LOC_Os08g15270
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:Macromolecule metabolism
Effect for Senescence	Unclear
Gene Description	ATP-dependent Clp protease proteolytic subunit, putative
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process proteolysis molecular function serine-type endopeptidase activity
Sequence	LOC_Os08g15270.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g15270  miRNA: osa-miR1857-5p miRNA: osa-miR1857-5p mfe: -24.8 kcal/mol  p-value: 0.022209  position:  105  target 5' A  G            U   U 3'             UU GUGUUCCAAAAG ACC              GA UACGAGGUUUUU UGG   miRNA  3' G  G            U   U 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10381 2.3E-96 1 216 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Hamap MF_00444 34.9 4 197 IPR001907 ClpP SUPERFAMILY SSF52096 1.2E-56 15 196 No hit NA Pfam PF00574 1.3E-65 17 195 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PRINTS PR00127 1.1E-47 22 37 IPR001907 ClpP PRINTS PR00127 1.1E-47 62 82 IPR001907 ClpP PRINTS PR00127 1.1E-47 93 110 IPR001907 ClpP ProSitePatterns PS00381 NA 93 104 IPR018215 ClpP, active site PRINTS PR00127 1.1E-47 114 133 IPR001907 ClpP ProSitePatterns PS00382 NA 115 128 IPR018215 ClpP, active site PRINTS PR00127 1.1E-47 172 191 IPR001907 ClpP