Basic information
Locus name	LOC_Os08g15149
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Redox regulation:Oxidoreductase
Effect for Senescence	unclear
Gene Description	Oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process oxidation-reduction process molecular function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors oxidoreductase activity
Sequence	LOC_Os08g15149.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g15149  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -34.1 kcal/mol  p-value: 0.009342  position:  229  target 5' C C              A G   U 3'             G CACG GCGUGCCGG G AGG              C GUGC CGCGCGGCC C UCC   miRNA  3' A      G         G       5'  target: LOC_Os08g15149  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -30.4 kcal/mol  p-value: 0.007389  position:  249  target 5' G    U                G 3'             GUGG GGCGAGGGCGGCGGAG              CGUU UUGUUCCCGUCGUUUU   miRNA  3' A                       5'  target: LOC_Os08g15149  miRNA: osa-miR820a miRNA: osa-miR820a mfe: -30.4 kcal/mol  p-value: 0.012831  position:  223  target 5' G    G         C U     A 3'             UGGU CG CCACGG G GCCGG              ACCA GU GGUGCU C CGGCU   miRNA  3' G    G  A                5'  target: LOC_Os08g15149  miRNA: osa-miR820b miRNA: osa-miR820b mfe: -30.4 kcal/mol  p-value: 0.014730  position:  223  target 5' G    G         C U     A 3'             UGGU CG CCACGG G GCCGG              ACCA GU GGUGCU C CGGCU   miRNA  3' G    G  A                5'  target: LOC_Os08g15149  miRNA: osa-miR820c miRNA: osa-miR820c mfe: -30.4 kcal/mol  p-value: 0.010824  position:  223  target 5' G    G         C U     A 3'             UGGU CG CCACGG G GCCGG              ACCA GU GGUGCU C CGGCU   miRNA  3' G    G  A                5'
Ortholog Group
Ortholog Groups: OG5_138398	Accession Taxon NP_566623 Arabidopsis thaliana NP_566624 Arabidopsis thaliana NP_850613 Arabidopsis thaliana NP_974337 Arabidopsis thaliana NP_001050669 Oryza sativa Japonica Group NP_001061373 ( LOC_Os08g15149 ) Oryza sativa Japonica Group estExt_gwp_gw1.C_2990015 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2990016 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2990019 Physcomitrella patens subsp. patens 29851.m002508 Ricinus communis 29851.m002509 Ricinus communis estExt_Genewise1.C_chr_30765 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10209 5.3E-83 5 306 No hit NA SUPERFAMILY SSF51197 6.9E-73 22 282 No hit NA Pfam PF14226 4.0E-26 40 155 IPR026992 Non-haem dioxygenase N-terminal domain ProSiteProfiles PS51471 11.8 144 248 IPR005123 Oxoglutarate/iron-dependent dioxygenase Pfam PF03171 1.0E-22 158 246 IPR005123 Oxoglutarate/iron-dependent dioxygenase