Basic information
Locus name	LOC_Os02g08360
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	RNA recognition motif, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process RNA processing molecular function RNA binding nucleic acid binding
Sequence	LOC_Os02g08360.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g08360  miRNA: osa-miR164a miRNA: osa-miR164a mfe: -31.9 kcal/mol  p-value: 0.027783  position:  978  target 5' A              C     C 3'             GCAC UG CCUGCU CUCCA              CGUG AC GGACGA GAGGU   miRNA  3' A    C  G      A       5'  target: LOC_Os02g08360  miRNA: osa-miR164b miRNA: osa-miR164b mfe: -31.9 kcal/mol  p-value: 0.020809  position:  978  target 5' A              C     C 3'             GCAC UG CCUGCU CUCCA              CGUG AC GGACGA GAGGU   miRNA  3' A    C  G      A       5'  target: LOC_Os02g08360  miRNA: osa-miR164c miRNA: osa-miR164c mfe: -29.9 kcal/mol  p-value: 0.038221  position:  978  target 5' A              C     C 3'             GCAC UG CCUGCU CUCCA              CGUG AU GGACGA GAGGU   miRNA  3' A    C  G      A       5'  target: LOC_Os02g08360  miRNA: osa-miR164d miRNA: osa-miR164d mfe: -32.4 kcal/mol  p-value: 0.025882  position:  977  target 5' A               C     C 3'             AGCAC UG CCUGCU CUCCA              UCGUG AC GGACGA GAGGU   miRNA  3'       C  G      A       5'  target: LOC_Os02g08360  miRNA: osa-miR164f miRNA: osa-miR164f mfe: -31.9 kcal/mol  p-value: 0.029044  position:  978  target 5' A              C     C 3'             GCAC UG CCUGCU CUCCA              CGUG AC GGACGA GAGGU   miRNA  3' A    C  G      A       5'  target: LOC_Os02g08360  miRNA: osa-miR1853-3p miRNA: osa-miR1853-3p mfe: -33.6 kcal/mol  p-value: 0.007234  position:  160  target 5' C    G          G     G 3'             GCAA CGAGCAUCCU GAUUA              CGUU GCUUGUAGGG UUAAU   miRNA  3' U    G          G       5'  target: LOC_Os02g08360  miRNA: osa-miR2866 miRNA: osa-miR2866 mfe: -23.2 kcal/mol  p-value: 0.079715  position:  1624  target 5' A                   G 3'             AUGCUG AUGCA GCUGGA              UACGAC UGUGU UGAUCU   miRNA  3' C      U     U        5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23140 9.9E-244 1 967 No hit NA Coils Coil NA 12 33 No hit NA SUPERFAMILY SSF54928 7.9E-20 171 268 No hit NA ProSiteProfiles PS50102 14.3 178 259 IPR000504 RNA recognition motif domain SMART SM00360 7.2E-16 179 255 IPR000504 RNA recognition motif domain Pfam PF00076 4.3E-11 180 252 IPR000504 RNA recognition motif domain SUPERFAMILY SSF109905 4.1E-19 302 380 IPR000061 SWAP/Surp Pfam PF01805 5.9E-15 325 377 IPR000061 SWAP/Surp SMART SM00648 9.1E-17 325 379 IPR000061 SWAP/Surp ProSiteProfiles PS50128 10.9 327 370 IPR000061 SWAP/Surp ProSiteProfiles PS51391 40.3 449 594 IPR006569 CID domain SUPERFAMILY SSF48464 3.8E-9 451 593 IPR008942 ENTH/VHS Coils Coil NA 454 475 No hit NA SMART SM00582 6.9E-21 456 591 IPR006569 CID domain ProSiteProfiles PS50800 8.7 643 677 IPR003034 SAP domain Pfam PF08312 7.0E-12 823 868 IPR013170 mRNA splicing factor, Cwf21