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| Locus name | LOC_Os03g04930 |
| Organism | Rice (Oryza sativa) |
| Taxonomic identifier | [NCBI] |
| Function category | Others:Protein biosynthesis |
| Effect for Senescence | Unclear |
| Gene Description | Pre-mRNA processing protein PRP39, putative, expressed |
| Evidence | Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1] |
| References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
| Sequence | LOC_Os03g04930.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction  | |
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| Details | | target: LOC_Os03g04930
miRNA: osa-miR1865-3p
miRNA: osa-miR1865-3p
mfe: -30.3 kcal/mol
p-value: 0.003909
position: 568
target 5' G G U 3'
ACAA UAGUGAUUGUGGUU CUUC
UGUU AUCACUGACGCUAA GAAG
miRNA 3' G C 5'
target: LOC_Os03g04930
miRNA: osa-miR399a
miRNA: osa-miR399a
mfe: -28.4 kcal/mol
p-value: 0.007903
position: 447
target 5' A U G A 3'
CAGGG A UUCUUCUU UGGCA
GUCCC U AAGAGGAA ACCGU
miRNA 3' G U 5'
target: LOC_Os03g04930
miRNA: osa-miR399b
miRNA: osa-miR399b
mfe: -28.4 kcal/mol
p-value: 0.006973
position: 447
target 5' A U G A 3'
CAGGG A UUCUUCUU UGGCA
GUCCC U AAGAGGAA ACCGU
miRNA 3' G U 5'
target: LOC_Os03g04930
miRNA: osa-miR399c
miRNA: osa-miR399c
mfe: -28.4 kcal/mol
p-value: 0.007275
position: 447
target 5' A U G A 3'
CAGGG A UUCUUCUU UGGCA
GUCCC U AAGAGGAA ACCGU
miRNA 3' G U 5'
target: LOC_Os03g04930
miRNA: osa-miR399d
miRNA: osa-miR399d
mfe: -27.9 kcal/mol
p-value: 0.022768
position: 447
target 5' A U G A 3'
CAGGG A UUCUUCUU UGGCA
GUCCC U GAGAGGAA ACCGU
miRNA 3' G U 5'
target: LOC_Os03g04930
miRNA: osa-miR529a
miRNA: osa-miR529a
mfe: -27.2 kcal/mol
p-value: 0.022392
position: 146
target 5' A U G C 3'
GGGGAGGGGAGGGG UG GG
CUUCUUCUCUCUCC AU UC
miRNA 3' C G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_150135 | |
| Cross Link | |
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