Basic information
Locus name	LOC_Os03g59740
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	ADP-ribosylation factor, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function GTP binding
Sequence	LOC_Os03g59740.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g59740  miRNA: osa-miR160a miRNA: osa-miR160a mfe: -33.3 kcal/mol  p-value: 0.009314  position:  419  target 5' C   G               A  A 3'             UGG AUGUGGGGGGUCAGG CA              ACC UAUGUCCCUCGGUCC GU   miRNA  3'     G                    5'  target: LOC_Os03g59740  miRNA: osa-miR160b miRNA: osa-miR160b mfe: -33.3 kcal/mol  p-value: 0.009645  position:  419  target 5' C   G               A  A 3'             UGG AUGUGGGGGGUCAGG CA              ACC UAUGUCCCUCGGUCC GU   miRNA  3'     G                    5'  target: LOC_Os03g59740  miRNA: osa-miR160c miRNA: osa-miR160c mfe: -33.3 kcal/mol  p-value: 0.007682  position:  419  target 5' C   G               A  A 3'             UGG AUGUGGGGGGUCAGG CA              ACC UAUGUCCCUCGGUCC GU   miRNA  3'     G                    5'  target: LOC_Os03g59740  miRNA: osa-miR160d miRNA: osa-miR160d mfe: -33.3 kcal/mol  p-value: 0.008888  position:  419  target 5' C   G               A  A 3'             UGG AUGUGGGGGGUCAGG CA              ACC UAUGUCCCUCGGUCC GU   miRNA  3'     G                    5'  target: LOC_Os03g59740  miRNA: osa-miR160e miRNA: osa-miR160e mfe: -32.8 kcal/mol  p-value: 0.012110  position:  420  target 5' U  G               A  A 3'             GG AUGUGGGGGGUCAGG CA              CC UAUGUCCCUCGGUCC GU   miRNA  3' G  G                    5'  target: LOC_Os03g59740  miRNA: osa-miR160f miRNA: osa-miR160f mfe: -31.9 kcal/mol  p-value: 0.008838  position:  419  target 5' C   G  G            A  A 3'             UGG AU UGGGGGGUCAGG CA              ACC UA GUCCCUCGGUCC GU   miRNA  3'     G  A                 5'  target: LOC_Os03g59740  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -39.6 kcal/mol  p-value: 0.001840  position:  156  target 5' G                   C 3'             GCGC CG GCGCCGGCGAG              CGUG GC CGCGGCCGCUC   miRNA  3' A    C  G           C 5'  target: LOC_Os03g59740  miRNA: osa-miR395f miRNA: osa-miR395f mfe: -24.8 kcal/mol  p-value: 0.053909  position:  997  target 5' U       G      U    U  U 3'             GAGUUCC UCGAAU AUUC GC              CUCAAGG GGUUUG UAAG UG   miRNA  3'         G      U         5'  target: LOC_Os03g59740  miRNA: osa-miR395v miRNA: osa-miR395v mfe: -25.6 kcal/mol  p-value: 0.016648  position:  997  target 5' U              U   C   U 3'             GAGUUCCGUCGAAU AUU UGC              CUCAAGGCGGUUUA UGA GUG   miRNA  3'                    A     5'  target: LOC_Os03g59740  miRNA: osa-miR818a miRNA: osa-miR818a mfe: -28.3 kcal/mol  p-value: 0.001257  position:  414  target 5' A      G              C 3'             CCGUCU G GAUGUGGGGGGU              GGCAGG U UUAUAUUCCCUA   miRNA  3'        G A            A 5'  target: LOC_Os03g59740  miRNA: osa-miR818b miRNA: osa-miR818b mfe: -28.3 kcal/mol  p-value: 0.002256  position:  414  target 5' A      G              C 3'             CCGUCU G GAUGUGGGGGGU              GGCAGG U UUAUAUUCCCUA   miRNA  3'        G A            A 5'  target: LOC_Os03g59740  miRNA: osa-miR818c miRNA: osa-miR818c mfe: -28.3 kcal/mol  p-value: 0.001250  position:  414  target 5' A      G              C 3'             CCGUCU G GAUGUGGGGGGU              GGCAGG U UUAUAUUCCCUA   miRNA  3'        G A            A 5'  target: LOC_Os03g59740  miRNA: osa-miR818d miRNA: osa-miR818d mfe: -28.3 kcal/mol  p-value: 0.001308  position:  414  target 5' A      G              C 3'             CCGUCU G GAUGUGGGGGGU              GGCAGG U UUAUAUUCCCUA   miRNA  3'        G A            A 5'  target: LOC_Os03g59740  miRNA: osa-miR818e miRNA: osa-miR818e mfe: -28.3 kcal/mol  p-value: 0.001457  position:  414  target 5' A      G              C 3'             CCGUCU G GAUGUGGGGGGU              GGCAGG U UUAUAUUCCCUA   miRNA  3'        G A            A 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11711 3.1E-105 1 153 No hit NA SMART SM00177 2.3E-107 1 170 IPR024156 Small GTPase superfamily, ARF type SMART SM00178 4.8E-21 1 186 IPR006687 Small GTPase superfamily, SAR1-type Pfam PF00025 9.1E-69 5 152 IPR006689 Small GTPase superfamily, ARF/SAR type ProSiteProfiles PS51417 20.8 11 178 IPR024156 Small GTPase superfamily, ARF type SUPERFAMILY SSF52540 6.4E-49 14 155 IPR027417 P-loop containing nucleoside triphosphate hydrolase TIGRFAM TIGR00231 4.9E-23 16 139 IPR005225 Small GTP-binding protein domain SMART SM00175 0.0 18 176 IPR003579 Small GTPase superfamily, Rab type PRINTS PR00328 1.6E-19 19 42 IPR006689 Small GTPase superfamily, ARF/SAR type PRINTS PR00328 1.6E-19 47 71 IPR006689 Small GTPase superfamily, ARF/SAR type PRINTS PR00328 1.6E-19 74 99 IPR006689 Small GTPase superfamily, ARF/SAR type PRINTS PR00328 1.6E-19 119 140 IPR006689 Small GTPase superfamily, ARF/SAR type