Basic information
Locus name	LOC_Os05g45270
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	Ribosomal protein L9, N-terminal domain containing protein, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process translation cellular component intracellular molecular function structural constituent of ribosome
Sequence	LOC_Os05g45270.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os05g45270  miRNA: osa-miR2101-3p miRNA: osa-miR2101-3p mfe: -26.4 kcal/mol  p-value: 0.003626  position:  392  target 5' G         U     U      G 3'             AUAAUGCUC CUUGG GUUGAG              UGUUACGAG GAACU CAAUUU   miRNA  3'           U            A 5'  target: LOC_Os05g45270  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -38.8 kcal/mol  p-value: 0.002403  position:  34  target 5' C          C            C 3'             CGCGC CGCG UCCUC CGCCGC              GUGCG GCGU AGGGG GCGGCG   miRNA  3'       A          A        5'
Ortholog Group
Ortholog Groups: OG5_133711	Accession Taxon NP_200119 Arabidopsis thaliana ACO63200 Micromonas sp. RCC299 NP_001056118 ( LOC_Os05g45270 ) Oryza sativa Japonica Group 29700.m000768 Ricinus communis XP_002954895 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21368 3.1E-68 22 204 IPR000244 Ribosomal protein L9 SUPERFAMILY SSF55658 1.9E-10 35 90 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Pfam PF01281 2.5E-14 36 72 IPR020070 Ribosomal protein L9, N-terminal Coils Coil NA 89 127 No hit NA SUPERFAMILY SSF55653 2.2E-12 107 188 IPR020069 Ribosomal protein L9, C-terminal Pfam PF03948 6.2E-6 115 188 IPR020069 Ribosomal protein L9, C-terminal