Basic information
Locus name	LOC_Os05g49800
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process branched-chain amino acid biosynthetic process oxidation-reduction process molecular function ketol-acid reductoisomerase activity oxidoreductase activity
Pathway	KEGG map00290 (EC 1.1.1.86) map00770 (EC 1.1.1.86) MetaCyc PWY-5103
Sequence	LOC_Os05g49800.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os05g49800  miRNA: osa-miR2868 miRNA: osa-miR2868 mfe: -22.3 kcal/mol  p-value: 0.087128  position:  646  target 5' C       C            A 3'             UUCU CU ACAUGAAACCAA              AAGA GA UGUGUUUUGGUU   miRNA  3' A    U                 5'  target: LOC_Os05g49800  miRNA: osa-miR397a miRNA: osa-miR397a mfe: -28.0 kcal/mol  p-value: 0.020702  position:  1408  target 5' A   U                U 3'             GUC ACGUUGCACU GAUGA              UAG UGCGACGUGA UUACU   miRNA  3' G   U          G       5'  target: LOC_Os05g49800  miRNA: osa-miR397b miRNA: osa-miR397b mfe: -25.8 kcal/mol  p-value: 0.046095  position:  1408  target 5' A   U                U 3'             GUC ACGUUGCACU GAUGA              UAG UGCGACGUGA UUAUU   miRNA  3' G   U          G       5'
Ortholog Group
Ortholog Groups: OG5_129100	Accession Taxon NP_001078309 Arabidopsis thaliana NP_191420 Arabidopsis thaliana CMR121C Cyanidioschyzon merolae strain 10D 140839 Chlamydomonas reinhardtii ACO62919 Micromonas sp. RCC299 NP_001043738 Oryza sativa Japonica Group NP_001056384 ( LOC_Os05g49800 ) Oryza sativa Japonica Group 0300010249 Ostreococcus tauri e_gw1.228.44.1 Physcomitrella patens subsp. patens estExt_fgenesh1_kg.C_2900001 Physcomitrella patens subsp. patens 29646.m001077 Ricinus communis 29900.m001612 Ricinus communis estExt_fgenesh1_pg.C_chr_60563 Thalassiosira pseudonana CCMP1335 XP_002950115 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000118 0.0 1 578 IPR016206 Ketol-acid reductoisomerase PANTHER PTHR21371 0.0 36 567 IPR013023 Acetohydroxy acid isomeroreductase SUPERFAMILY SSF51735 2.3E-54 68 286 No hit NA Pfam PF07991 3.7E-32 108 282 IPR013116 Acetohydroxy acid isomeroreductase, catalytic Pfam PF01450 4.7E-18 290 437 IPR000506 Acetohydroxy acid isomeroreductase C-terminal SUPERFAMILY SSF48179 1.1E-97 291 576 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like Pfam PF01450 6.6E-31 448 574 IPR000506 Acetohydroxy acid isomeroreductase C-terminal