Basic information
Locus name	LOC_Os05g51180
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	Hyaluronan/mRNA binding family protein, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Sequence	LOC_Os05g51180.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os05g51180  miRNA: osa-miR2102-5p miRNA: osa-miR2102-5p mfe: -33.6 kcal/mol  p-value: 0.011673  position:  552  target 5' G             G    G G 3'             GUGGUGGUGGUGG UUUG U              CACCGCCGCCGCC GAAC G   miRNA  3'                    G G 5'  target: LOC_Os05g51180  miRNA: osa-miR2906a miRNA: osa-miR2906a mfe: -32.7 kcal/mol  p-value: 0.014928  position:  312  target 5' G U              G   C 3'             C GC G GCGGCGGCC CGU              G CG C CGCCGCCGG GCA   miRNA  3' G U  U A             A 5'  target: LOC_Os05g51180  miRNA: osa-miR2906b miRNA: osa-miR2906b mfe: -32.7 kcal/mol  p-value: 0.014299  position:  312  target 5' G U              G   C 3'             C GC G GCGGCGGCC CGU              G CG C CGCCGCCGG GCA   miRNA  3' G U  U A             A 5'  target: LOC_Os05g51180  miRNA: osa-miR444a miRNA: osa-miR444a mfe: -29.5 kcal/mol  p-value: 0.017123  position:  309  target 5' A       C         C   U 3'             AGGC UG GGCGGCGGC GCG              UUCG AC CCGUCGUUG CGU   miRNA  3'      A  U         A     5'  target: LOC_Os05g51180  miRNA: osa-miR444d miRNA: osa-miR444d mfe: -29.5 kcal/mol  p-value: 0.022934  position:  309  target 5' A       C         C   U 3'             AGGC UG GGCGGCGGC GCG              UUCG AC CCGUCGUUG CGU   miRNA  3'      A  U         A     5'  target: LOC_Os05g51180  miRNA: osa-miR444e miRNA: osa-miR444e mfe: -29.5 kcal/mol  p-value: 0.022150  position:  309  target 5' A       C         C   U 3'             AGGC UG GGCGGCGGC GCG              UUCG AC CCGUCGUUG CGU   miRNA  3'      A  U         A     5'  target: LOC_Os05g51180  miRNA: osa-miR444f miRNA: osa-miR444f mfe: -27.0 kcal/mol  p-value: 0.038380  position:  309  target 5' A       C         C   U 3'             AGGC UG GGCGGCGGC GCG              UUCG AC CCGUUGUUG CGU   miRNA  3'      A  U         A     5'  target: LOC_Os05g51180  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -24.6 kcal/mol  p-value: 0.053449  position:  593  target 5' U     C  U      A      G 3'             GAAGA GG GAGGGG G ACAG              CUUCU UC CUCUCC C UGUC   miRNA  3'          U        A      5'
Ortholog Group
Ortholog Groups: OG5_128646	Accession Taxon NP_001078399 Arabidopsis thaliana NP_001078400 Arabidopsis thaliana NP_001078723 Arabidopsis thaliana NP_001078724 Arabidopsis thaliana NP_193416 Arabidopsis thaliana NP_193485 Arabidopsis thaliana NP_199532 Arabidopsis thaliana CMR085C Cyanidioschyzon merolae strain 10D 33956 Chlamydomonas reinhardtii ACO61765 Micromonas sp. RCC299 NP_001043502 Oryza sativa Japonica Group NP_001044098 Oryza sativa Japonica Group NP_001056139 Oryza sativa Japonica Group NP_001056483 ( LOC_Os05g51180 ) Oryza sativa Japonica Group 0300010181 Ostreococcus tauri estExt_fgenesh1_kg.C_4560001 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_450162 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_970090 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_22000005 Physcomitrella patens subsp. patens 28193.m000296 Ricinus communis 30174.m008745 Ricinus communis estExt_fgenesh1_pg.C_chr_10020 Thalassiosira pseudonana CCMP1335 XP_002952682 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12299 2.6E-201 1 383 No hit NA Pfam PF09598 2.6E-8 5 72 IPR019084 Stm1, N-terminal Pfam PF04774 2.8E-27 161 273 IPR006861 Hyaluronan/mRNA-binding protein Coils Coil NA 249 286 No hit NA