Basic information
Locus name	LOC_Os09g08430
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	60S ribosomal protein L17, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process translation cellular component large ribosomal subunit molecular function structural constituent of ribosome
Sequence	LOC_Os09g08430.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os09g08430  miRNA: osa-miR808 miRNA: osa-miR808 mfe: -27.6 kcal/mol  p-value: 0.000698  position:  414  target 5' C  U      G           A 3'             UC UUAUGU UCCCACAUUCA              AG AAUGUA AGGGUGUAAGU   miRNA  3' A         A           A 5'
Ortholog Group
Ortholog Groups: OG5_126900	Accession Taxon NP_174060 Arabidopsis thaliana NP_176910 Arabidopsis thaliana CMQ463C Cyanidioschyzon merolae strain 10D 77517 Chlamydomonas reinhardtii NP_113204 Guillardia theta ACO61050 Micromonas sp. RCC299 NP_001062324 Oryza sativa Japonica Group NP_001062701 ( LOC_Os09g08430 ) Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_06.00010179 Ostreococcus tauri e_gw1.364.42.1 Physcomitrella patens subsp. patens e_gw1.38.196.1 Physcomitrella patens subsp. patens e_gw1.97.122.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_970039 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_220053 Physcomitrella patens subsp. patens 30147.m014519 Ricinus communis e_gw1.3.684.1 Thalassiosira pseudonana CCMP1335 XP_002949139 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11593 6.0E-120 1 170 IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal SUPERFAMILY SSF54843 1.7E-57 1 154 IPR001063 Ribosomal protein L22/L17 Hamap MF_01331_A 25.0 2 154 IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal TIGRFAM TIGR01038 9.0E-61 4 154 IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal Pfam PF00237 2.5E-34 17 153 IPR001063 Ribosomal protein L22/L17 ProSitePatterns PS00464 NA 127 151 IPR018260 Ribosomal protein L22/L17, conserved site