Basic information
Locus name	LOC_Os09g23730
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	AT hook motif family protein, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component chromatin molecular function DNA binding
Sequence	LOC_Os09g23730.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os09g23730  miRNA: osa-miR160f miRNA: osa-miR160f mfe: -30.5 kcal/mol  p-value: 0.012994  position:  711  target 5' C C  G            C  C 3'             G CG UCGGGGAGCCAG CG              C GU AGUCCCUCGGUC GU   miRNA  3' A C  A            C    5'  target: LOC_Os09g23730  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -37.0 kcal/mol  p-value: 0.003923  position:  701  target 5' A A C            U     A 3'             G C CGC CGCGCCGG CGGGG              C G GCG GCGCGGCC GCUCC   miRNA  3' A   U   C                5'
Ortholog Group
Ortholog Groups: OG5_163822	Accession Taxon NP_172943 Arabidopsis thaliana NP_001061850 Oryza sativa Japonica Group NP_001063124 ( LOC_Os09g23730 ) Oryza sativa Japonica Group 29692.m000530 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF46785 5.3E-17 18 98 No hit NA SMART SM00526 1.3E-23 19 86 IPR005818 Histone H1/H5 ProSiteProfiles PS51504 22.8 21 92 IPR005818 Histone H1/H5 Pfam PF00538 1.1E-12 22 84 IPR005818 Histone H1/H5 PRINTS PR00930 5.2E-6 96 108 IPR000116 High mobility group, HMG-I/HMG-Y PRINTS PR00929 4.3E-14 98 108 IPR020478 AT hook-like SMART SM00384 4.7 98 110 IPR017956 AT hook, DNA-binding motif PRINTS PR00929 4.3E-14 127 138 IPR020478 AT hook-like PRINTS PR00930 5.2E-6 129 140 IPR000116 High mobility group, HMG-I/HMG-Y SMART SM00384 23.0 129 141 IPR017956 AT hook, DNA-binding motif PRINTS PR00930 5.2E-6 143 162 IPR000116 High mobility group, HMG-I/HMG-Y SMART SM00384 14.0 154 166 IPR017956 AT hook, DNA-binding motif PRINTS PR00929 4.3E-14 190 200 IPR020478 AT hook-like SMART SM00384 1.3 192 204 IPR017956 AT hook, DNA-binding motif