Basic information
Locus name	LOC_Os04g16740
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Energe
Effect for Senescence	Unclear
Gene Description	ATP synthase alpha chain, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process ATP hydrolysis coupled proton transport ATP metabolic process ATP synthesis coupled proton transport proton transport cellular component proton-transporting ATP synthase complex, catalytic core F(1) molecular function ATP binding hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism
Pathway	KEGG map00190 (EC 3.6.3.14) map00195 (EC 3.6.3.14) map00680 (EC 3.6.3.14) MetaCyc PWY-6126
Sequence	LOC_Os04g16740.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os04g16740  miRNA: osa-miR531b miRNA: osa-miR531b mfe: -37.0 kcal/mol  p-value: 0.008952  position:  724  target 5' A   G             U   U 3'             CGG A GCAGCCCUGGC GAG              GCC U CGUCGGGGCCG CUC   miRNA  3'     G G                 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR15184 0.0 1 504 No hit NA Hamap MF_01346 49.0 2 502 IPR005294 ATPase, F1 complex, alpha subunit TIGRFAM TIGR00962 9.4E-239 4 501 IPR005294 ATPase, F1 complex, alpha subunit SUPERFAMILY SSF50615 1.4E-26 11 95 IPR004100 ATPase, alpha/beta subunit, N-terminal Pfam PF02874 2.6E-16 27 93 IPR004100 ATPase, alpha/beta subunit, N-terminal SUPERFAMILY SSF52540 1.1E-97 97 371 IPR027417 P-loop containing nucleoside triphosphate hydrolase Pfam PF00006 4.5E-75 149 365 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain ProSitePatterns PS00152 NA 356 365 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site SUPERFAMILY SSF47917 7.1E-42 373 501 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal Pfam PF00306 5.3E-21 377 472 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal