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Locus name | LOC_Os01g01340 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Regulation:Regulatory genes |
Effect for Senescence | Unclear |
Gene Description | Cytokinin-repressed protein CR9, putative, expressed |
Evidence | Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1] |
References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
Sequence | LOC_Os01g01340.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: LOC_Os01g01340 miRNA: osa-miR1433 miRNA: osa-miR1433 mfe: -30.0 kcal/mol p-value: 0.018602
position: 254 target 5' C A U G A 3' GGUGGC G GGAGGCU GC G CCAUCG C CCUCUGA CG U miRNA 3' G U A G 5'
target: LOC_Os01g01340 miRNA: osa-miR413 miRNA: osa-miR413 mfe: -25.2 kcal/mol p-value: 0.017076
position: 924 target 5' U U U U A 3' GUG C A GACAGGUGGGACUAG CAC G U UUGUUCACUUUGAUC miRNA 3' C 5'
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Ortholog Group | |
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Ortholog Groups: OG5_177843 | |
Cross Link | |
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Database | Entry ID | E-value | Start | End | InterPro ID | Description | Pfam | PF07207 | 1.5E-55 | 1 | 127 | IPR009856 | Light regulated Lir1 |
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