Basic information
Locus name	LOC_Os02g46610
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	Unclear
Gene Description	Zinc-binding family protein, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Sequence	LOC_Os02g46610.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g46610  miRNA: osa-miR2118f miRNA: osa-miR2118f mfe: -28.7 kcal/mol  p-value: 0.020569  position:  174  target 5' G               G     G 3'             AGGAA G GGGGUAU AGGAG              UCCUU C CUCCGUA UCCUU   miRNA  3' A     A C       G       5'  target: LOC_Os02g46610  miRNA: osa-miR2118h miRNA: osa-miR2118h mfe: -28.7 kcal/mol  p-value: 0.016848  position:  174  target 5' G               G     G 3'             AGGAA G GGGGUAU AGGAG              UCCUU C CUCCGUA UCCUU   miRNA  3' A     A U       G       5'  target: LOC_Os02g46610  miRNA: osa-miR2118j miRNA: osa-miR2118j mfe: -28.7 kcal/mol  p-value: 0.018422  position:  174  target 5' G               G     G 3'             AGGAA G GGGGUAU AGGAG              UCCUU C CUCCGUA UCCUU   miRNA  3' A     A C       G       5'  target: LOC_Os02g46610  miRNA: osa-miR2118k miRNA: osa-miR2118k mfe: -28.7 kcal/mol  p-value: 0.015483  position:  174  target 5' G               G     G 3'             AGGAA G GGGGUAU AGGAG              UCCUU C CUCCGUA UCCUU   miRNA  3' A     A U       G       5'  target: LOC_Os02g46610  miRNA: osa-miR2118m miRNA: osa-miR2118m mfe: -28.7 kcal/mol  p-value: 0.018863  position:  174  target 5' G               G     G 3'             AGGAA G GGGGUAU AGGAG              UCCUU C CUCCGUA UCCUU   miRNA  3' A     A C       G       5'
Ortholog Group
Ortholog Groups: OG5_144903	Accession Taxon NP_001078404 Arabidopsis thaliana NP_193524 Arabidopsis thaliana NP_564406 Arabidopsis thaliana NP_973953 Arabidopsis thaliana NP_001047798 ( LOC_Os02g46610 ) Oryza sativa Japonica Group NP_001053711 Oryza sativa Japonica Group e_gw1.1.253.1 Physcomitrella patens subsp. patens e_gw1.6.367.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1330066 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_102000043 Physcomitrella patens subsp. patens 30054.m000824 Ricinus communis 30073.m002298 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31065 3.1E-105 12 251 No hit NA Pfam PF04640 5.7E-41 88 159 IPR006734 Protein of unknown function DUF597