Basic information
Locus name	LOC_Os02g54160
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:ET
Effect for Senescence	Unclear
Gene Description	Ethylene response element binding protein, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	LOC_Os02g54160.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g54160  miRNA: osa-miR164c miRNA: osa-miR164c mfe: -29.0 kcal/mol  p-value: 0.024405  position:  887  target 5' C   A   A        G    U 3'             UGC AUG ACUCUGCU CUCC              ACG UGC UGGGACGA GAGG   miRNA  3'         A        A    U 5'  target: LOC_Os02g54160  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -33.4 kcal/mol  p-value: 0.024865  position:  206  target 5' C G G G U        G   C  A 3'             G A G G CGCGCCGG CGA GG              C U C C GCGCGGCC GCU CC   miRNA  3' A G G G                   5'
Ortholog Group
Ortholog Groups: OG5_150202	Accession Taxon NP_001031185 Arabidopsis thaliana NP_001077718 Arabidopsis thaliana NP_175794 Arabidopsis thaliana NP_566482 Arabidopsis thaliana NP_850582 Arabidopsis thaliana NP_850583 Arabidopsis thaliana NP_001048319 ( LOC_Os02g54160 ) Oryza sativa Japonica Group NP_001057044 Oryza sativa Japonica Group NP_001063252 Oryza sativa Japonica Group 27585.m000144 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31190 2.1E-91 2 365 No hit NA Pfam PF00847 1.9E-15 119 168 IPR001471 AP2/ERF domain ProSiteProfiles PS51032 23.5 119 176 IPR001471 AP2/ERF domain SMART SM00380 9.9E-36 119 182 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 4.1E-21 119 176 IPR016177 DNA-binding, integrase-type PRINTS PR00367 1.3E-10 120 131 IPR001471 AP2/ERF domain PRINTS PR00367 1.3E-10 142 158 IPR001471 AP2/ERF domain